RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 CATSPER3Q86XQ3 398 aa21.57■■□□□ 1.04
PTCH1-227ENST00000553256 TPH2Q8IWU9 490 aa21.57■■□□□ 1.04
PTCH1-227ENST00000553256 ARNTL2Q8WYA1 636 aa21.57■■□□□ 1.04
PTCH1-227ENST00000553256 CLP1Q92989 425 aaKnown RBP21.57■■□□□ 1.04
PTCH1-227ENST00000553256 ZNF668Q96K58 619 aaPredicted RBP21.57■■□□□ 1.04
PTCH1-227ENST00000553256 CEP170P1Q96L14 293 aa21.57■■□□□ 1.04
PTCH1-227ENST00000553256 POLR3CQ9BUI4 534 aaPredicted RBP21.57■■□□□ 1.04
PTCH1-227ENST00000553256 IFT122Q9HBG6 1241 aa21.57■■□□□ 1.04
PTCH1-227ENST00000553256 ANKEF1Q9NU02 776 aa21.57■■□□□ 1.04
PTCH1-227ENST00000553256 RFC5P40937 340 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 SARSP49591 514 aaKnown RBP21.56■■□□□ 1.04
PTCH1-227ENST00000553256 NPAS4Q8IUM7 802 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 KSR1Q8IVT5 923 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 IGSF22Q8N9C0 903 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 GAS2L1Q99501 681 aaPredicted RBP21.56■■□□□ 1.04
PTCH1-227ENST00000553256 ADAM2Q99965 735 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 SUCLA2Q9P2R7 463 aaPredicted RBP21.56■■□□□ 1.04
PTCH1-227ENST00000553256 KIF3AQ9Y496 699 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 ARID2Q68CP9 1835 aa21.56■■□□□ 1.04
PTCH1-227ENST00000553256 COL4A4P53420 1690 aaPredicted RBP21.56■■□□□ 1.04
PTCH1-227ENST00000553256 A0A087WZ62 844 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 XRCC6P12956 609 aaKnown RBP eCLIP21.55■■□□□ 1.04
PTCH1-227ENST00000553256 TECP42680 631 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 RARRES1P49788 294 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 CDC42EP1Q00587 391 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 ECM1Q16610 540 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 ZNF410Q86VK4 478 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 YME1L1Q96TA2 773 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 JPH2Q9BR39 696 aaPredicted RBP21.55■■□□□ 1.04
PTCH1-227ENST00000553256 FDXACB1Q9BRP7 624 aaPredicted RBP21.55■■□□□ 1.04
PTCH1-227ENST00000553256 TUFT1Q9NNX1 390 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 RNF19AQ9NV58 838 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 SMC3Q9UQE7 1217 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.55■■□□□ 1.04
PTCH1-227ENST00000553256 ADGRA3Q8IWK6 1321 aa21.55■■□□□ 1.04
PTCH1-227ENST00000553256 A0A087WWV3 80 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 CSDE1O75534 798 aaKnown RBP21.54■■□□□ 1.04
PTCH1-227ENST00000553256 RPA1P27694 616 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 PTGDRQ13258 359 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 EMC2Q15006 297 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 EPC2Q52LR7 807 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 SLC24A5Q71RS6 500 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 OTUD6AQ7L8S5 288 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 PRPF31Q8WWY3 499 aaKnown RBP21.54■■□□□ 1.04
PTCH1-227ENST00000553256 C1orf112Q9NSG2 853 aa21.54■■□□□ 1.04
PTCH1-227ENST00000553256 NOL7Q9UMY1 257 aaKnown RBP21.54■■□□□ 1.04
PTCH1-227ENST00000553256 C5orf67F2Z3F1 127 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 FGFR4P22455 802 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 PDIA5Q14554 519 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 XKR9Q5GH70 373 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 ODR4Q5SWX8 454 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 PIGOQ8TEQ8 1089 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 GDPD5Q8WTR4 605 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 SLC7A3Q8WY07 619 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 TMEM143Q96AN5 459 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 TRAIPQ9BWF2 469 aa21.53■■□□□ 1.04
PTCH1-227ENST00000553256 ELAC1Q9H777 363 aaKnown RBP21.53■■□□□ 1.04
PTCH1-227ENST00000553256 GAS2O43903 313 aaKnown RBP21.52■■□□□ 1.04
PTCH1-227ENST00000553256 ARL2P36404 184 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 PRPHP41219 470 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 GATMP50440 423 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 DNM2P50570 870 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 RILPL1Q5EBL4 403 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 ZNF598Q86UK7 904 aaKnown RBP21.52■■□□□ 1.04
PTCH1-227ENST00000553256 FERMT3Q86UX7 667 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 RHPN2Q8IUC4 686 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 TMEM192Q8IY95 271 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 EXOC8Q8IYI6 725 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 CMTR2Q8IYT2 770 aaKnown RBP21.52■■□□□ 1.04
PTCH1-227ENST00000553256 SAMD11Q96NU1 681 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 MINDY3Q9H8M7 445 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 LMCD1Q9NZU5 365 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 DBR1Q9UK59 544 aaKnown RBP21.52■■□□□ 1.04
PTCH1-227ENST00000553256 COL4A3BPQ9Y5P4 624 aa21.52■■□□□ 1.04
PTCH1-227ENST00000553256 ATF7P17544 494 aaPredicted RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 MUTP22033 750 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 POLGP54098 1239 aaPredicted RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 ATP2C1P98194 919 aaPredicted RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 LAMTOR4Q0VGL1 99 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 GNL2Q13823 731 aaKnown RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 LARP1BQ659C4 914 aaKnown RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 IFNLR1Q8IU57 520 aaPredicted RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 NLRP7Q8WX94 980 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 SNX21Q969T3 373 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 INTS4Q96HW7 963 aaKnown RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 MMTAG2Q9BU76 263 aaKnown RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 GCOM2Q9BZD3 368 aaPredicted RBP21.51■■□□□ 1.03
PTCH1-227ENST00000553256 PRDM6Q9NQX0 595 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 TMEM161AQ9NX61 479 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 MTUS1Q9ULD2 1270 aa21.51■■□□□ 1.03
PTCH1-227ENST00000553256 H3BNC9 293 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 LAD1O00515 517 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 DGAT1O75907 488 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 IGFBP4P22692 258 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 BMPR1AP36894 532 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 FAM102BQ5T8I3 360 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 POTEGQ6S5H5 508 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 FIBCD1Q8N539 461 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 ASAP3Q8TDY4 903 aa21.5■■□□□ 1.03
PTCH1-227ENST00000553256 PSPC1Q8WXF1 523 aaKnown RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms