RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 RBL2Q08999 1139 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 CCDC183Q5T5S1 534 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 RNF207Q6ZRF8 634 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 CCDC73Q6ZRK6 1079 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 SEPT14Q6ZU15 432 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 NOSTRINQ8IVI9 506 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 DBF4BQ8NFT6 615 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 ANP32BQ92688 251 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 KAT2BQ92831 832 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 MKL1Q969V6 931 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 CCDC34Q96HJ3 373 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 RPGRIP1Q96KN7 1286 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 C11orf84Q9BUA3 381 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 GZF1Q9H116 711 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 GDPD2Q9HCC8 539 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 C6orf50Q9HD87 102 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 ALG13Q9NP73 1137 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 DDX19AQ9NUU7 478 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 TFIP11Q9UBB9 837 aaKnown RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 MAD2L2Q9UI95 211 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 TET1Q8NFU7 2136 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 FRMPD2Q68DX3 1309 aaPredicted RBP8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 EMSYQ7Z589 1322 aa8.02□□□□□ -1.13
DEPDC4-208ENST00000549341 EP300Q09472 2414 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 RSPH10B2B2RC85 870 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 SPTLC2O15270 562 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 DTNBO60941 627 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 PPP6R2O75170 966 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 PDGFBP01127 241 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 GH1P01241 217 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 RSPH10BP0C881 870 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 PDHBP11177 359 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 RPS6P62753 249 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 SKOR1P84550 965 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 SIGLEC14Q08ET2 396 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 PTK7Q13308 1070 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 LY6KQ17RY6 165 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 KIAA0753Q2KHM9 967 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 TRIM71Q2Q1W2 868 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 MCTP2Q6DN12 878 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 HEATR3Q7Z4Q2 680 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 FRMD5Q7Z6J6 570 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 SESTD1Q86VW0 696 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 CMTR1Q8N1G2 835 aaKnown RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 FIBCD1Q8N539 461 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 USP28Q96RU2 1077 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 PHF20Q9BVI0 1012 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 IRF2BPLQ9H1B7 796 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 VPS54Q9P1Q0 977 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 BARX2Q9UMQ3 279 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 USP15Q9Y4E8 981 aaPredicted RBP8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 COL4A6Q14031 1691 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 MYH6P13533 1939 aa8.01□□□□□ -1.13
DEPDC4-208ENST00000549341 DNAH14Q0VDD8 3507 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 CCDC194A0A1B0GVG4 234 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 A0A1W2PQ27 194 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 A0A1W2PQ64 194 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 A0A1W2PQD8 194 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 MED19A0JLT2 244 aaPredicted RBP8□□□□□ -1.13
DEPDC4-208ENST00000549341 SNHG28P0DPA3 235 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 EDNRBP24530 442 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 AVPR2P30518 371 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 NASPP49321 788 aaPredicted RBP8□□□□□ -1.13
DEPDC4-208ENST00000549341 NAPAP54920 295 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 ZNF445P59923 1031 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 CEBPZQ03701 1054 aaKnown RBP8□□□□□ -1.13
DEPDC4-208ENST00000549341 ARHGAP1Q07960 439 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 ZNF543Q08ER8 600 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 SUZ12Q15022 739 aaKnown RBP8□□□□□ -1.13
DEPDC4-208ENST00000549341 DGKDQ16760 1214 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 SYDE2Q5VT97 1194 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 ADALQ6DHV7 355 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 TTBK2Q6IQ55 1244 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 FAM173BQ6P4H8 233 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 TEX2Q8IWB9 1127 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 BLIDQ8IZY5 108 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 ADSSL1Q8N142 457 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 STAG2Q8N3U4 1231 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 GPT2Q8TD30 523 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 SEPT8Q92599 483 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 PPP2R3CQ969Q6 453 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 ASIC4Q96FT7 647 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 AIFM3Q96NN9 605 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 KATNAL1Q9BW62 490 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 RANBP17Q9H2T7 1088 aaKnown RBP8□□□□□ -1.13
DEPDC4-208ENST00000549341 RIOX1Q9H6W3 641 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 BARHL2Q9NY43 387 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 FAM13BQ9NYF5 915 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 HOOK1Q9UJC3 728 aaKnown RBP8□□□□□ -1.13
DEPDC4-208ENST00000549341 PCDHA4Q9UN74 947 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 KCNJ14Q9UNX9 436 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 WASF2Q9Y6W5 498 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 MYO7AQ13402 2215 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 SCN10AQ9Y5Y9 1956 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 ADGRA3Q8IWK6 1321 aa8□□□□□ -1.13
DEPDC4-208ENST00000549341 TCHHQ07283 1943 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 ZNF292O60281 2723 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 LOC102724159A0A0B4J2E5 919 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 PNMA6FA0A0J9YX94 578 aa7.99□□□□□ -1.13
DEPDC4-208ENST00000549341 ESYT2A0FGR8 921 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms