RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CUEDC2Q9H467 287 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 GDPD2Q9HCC8 539 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 BMP2KQ9NSY1 1161 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-213ENST00000546820 KCNG1Q9UIX4 513 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 GINS2Q9Y248 185 aa15.29■□□□□ 0.04
PTCH1-213ENST00000546820 A0A1W2PQ27 194 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 A0A1W2PQ64 194 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 A0A1W2PQD8 194 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 MAGEA10P43363 369 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-213ENST00000546820 SLC12A3P55017 1021 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 MKRN4PQ13434 485 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-213ENST00000546820 TFDP1Q14186 410 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 KIZQ2M2Z5 673 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 FAM102BQ5T8I3 360 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 MAEAQ7L5Y9 396 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 ZNF410Q86VK4 478 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 NLRP7Q8WX94 980 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 KIFAP3Q92845 792 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 GCOM2Q9BZD3 368 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-213ENST00000546820 IL23AQ9NPF7 189 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 KCNH3Q9ULD8 1083 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 COL4A3BPQ9Y5P4 624 aa15.28■□□□□ 0.04
PTCH1-213ENST00000546820 LOXHD1Q8IVV2 1947 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 POLR2DO15514 142 aaKnown RBP15.27■□□□□ 0.04
PTCH1-213ENST00000546820 GPR32O75388 356 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 FGBP02675 491 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 KRT18P05783 430 aaKnown RBP15.27■□□□□ 0.04
PTCH1-213ENST00000546820 ACTN1P12814 892 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 GUCY2CP25092 1073 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 ARL2P36404 184 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 GPC3P51654 580 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 AMPD3Q01432 767 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 POU5F1BQ06416 359 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 MGAT3Q09327 533 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 LAMTOR4Q0VGL1 99 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 DRP2Q13474 957 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 DHX8Q14562 1220 aaKnown RBP15.27■□□□□ 0.04
PTCH1-213ENST00000546820 MCM6Q14566 821 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 PPP2R5AQ15172 486 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 TRAF7Q6Q0C0 670 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 C1orf186Q6ZWK4 172 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 DEFB128Q7Z7B8 93 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 IFT74Q96LB3 600 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 DRC1Q96MC2 740 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 UBE2OQ9C0C9 1292 aaKnown RBP15.27■□□□□ 0.04
PTCH1-213ENST00000546820 XPNPEP1Q9NQW7 623 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 BLOC1S4Q9NUP1 217 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 USP25Q9UHP3 1055 aa15.27■□□□□ 0.04
PTCH1-213ENST00000546820 GPR182O15218 404 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 SRGAP2CP0DJJ0 459 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 BMP8BP34820 402 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 TPRNQ4KMQ1 711 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 FBXO47Q5MNV8 452 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 PSRC1Q6PGN9 363 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-213ENST00000546820 TSHZ1Q6ZSZ6 1077 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 GPBP1Q86WP2 473 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 CEP57L1Q8IYX8 460 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 MRPS27Q92552 414 aaKnown RBP15.26■□□□□ 0.03
PTCH1-213ENST00000546820 SEPT8Q92599 483 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 DHX58Q96C10 678 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 CCDC34Q96HJ3 373 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 NLRP4Q96MN2 994 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 POLR3FQ9H1D9 316 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-213ENST00000546820 ADAMTS10Q9H324 1103 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 C17orf75Q9HAS0 396 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 MAGEF1Q9HAY2 307 aa15.26■□□□□ 0.03
PTCH1-213ENST00000546820 MKI67P46013 3256 aaKnown RBP15.26■□□□□ 0.03
PTCH1-213ENST00000546820 A0A087WZ62 844 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 A0A1B0GVL5 298 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 NBNO60934 754 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 RPS6KA5O75582 802 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 CXCL10P02778 98 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 GHRP10912 638 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 EIF4BP23588 611 aaKnown RBP15.25■□□□□ 0.03
PTCH1-213ENST00000546820 SYKP43405 635 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 PHKA2P46019 1235 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 NCBP1Q09161 790 aaKnown RBP15.25■□□□□ 0.03
PTCH1-213ENST00000546820 IKBKEQ14164 716 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 SRGAP1Q7Z6B7 1085 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 FSIP1Q8NA03 581 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 RNF149Q8NC42 400 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 APBB2Q92870 758 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 GBP4Q96PP9 640 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 PPP1R16BQ96T49 567 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 OSMRQ99650 979 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 GDF15Q99988 308 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 FDXACB1Q9BRP7 624 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-213ENST00000546820 RUSC1Q9BVN2 902 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 IFIH1Q9BYX4 1025 aaKnown RBP15.25■□□□□ 0.03
PTCH1-213ENST00000546820 MTIF3Q9H2K0 278 aaKnown RBP15.25■□□□□ 0.03
PTCH1-213ENST00000546820 CDHR5Q9HBB8 845 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 ODF2LQ9ULJ1 636 aa15.25■□□□□ 0.03
PTCH1-213ENST00000546820 A0A087X0B3 334 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 EFCAB14O75071 495 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 HIP1RO75146 1068 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 ACRP10323 421 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 DARSP14868 501 aaKnown RBP15.24■□□□□ 0.03
PTCH1-213ENST00000546820 PFKFB1P16118 471 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 SMTNP53814 917 aa15.24■□□□□ 0.03
PTCH1-213ENST00000546820 PAK2Q13177 524 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms