RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 POLR3CQ9BUI4 534 aaPredicted RBP13.27□□□□□ -0.29
YBX3-217ENST00000546164 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.27□□□□□ -0.29
YBX3-217ENST00000546164 ST3GAL5Q9UNP4 418 aa13.27□□□□□ -0.29
YBX3-217ENST00000546164 PCDHB6Q9Y5E3 794 aa13.27□□□□□ -0.29
YBX3-217ENST00000546164 EYSQ5T1H1 3165 aa13.27□□□□□ -0.29
YBX3-217ENST00000546164 TTC3P53804 2025 aa13.27□□□□□ -0.29
YBX3-217ENST00000546164 LINC01553A4QN01 128 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 DARSP14868 501 aaKnown RBP13.26□□□□□ -0.29
YBX3-217ENST00000546164 MUTP22033 750 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 PRPHP41219 470 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 TECP42680 631 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 POLGP54098 1239 aaPredicted RBP13.26□□□□□ -0.29
YBX3-217ENST00000546164 NFX1Q12986 1120 aaKnown RBP13.26□□□□□ -0.29
YBX3-217ENST00000546164 PTGDRQ13258 359 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 PDIA5Q14554 519 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 XKR9Q5GH70 373 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 FAM117BQ6P1L5 589 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 CATSPER3Q86XQ3 398 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 ERMNQ8TAM6 284 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 PRUNE2Q8WUY3 3088 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 PPP1R16BQ96T49 567 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 PRDM12Q9H4Q4 367 aa13.26□□□□□ -0.29
YBX3-217ENST00000546164 RC3H2Q9HBD1 1191 aaKnown RBP13.26□□□□□ -0.29
YBX3-217ENST00000546164 SUCLA2Q9P2R7 463 aaPredicted RBP13.26□□□□□ -0.29
YBX3-217ENST00000546164 A0A0C4DFX4 3053 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 ZBTB39O15060 712 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 FOSL2P15408 326 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 RPA1P27694 616 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 ERVK-21P61565 698 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 ADGRE1Q14246 886 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 DSC3Q14574 896 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 EMC2Q15006 297 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 HAUS3Q68CZ6 603 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 BRAPQ7Z569 592 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 NPAS4Q8IUM7 802 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 IGSF22Q8N9C0 903 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 TCP11Q8WWU5 503 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 TGS1Q96RS0 853 aaKnown RBP13.25□□□□□ -0.29
YBX3-217ENST00000546164 YME1L1Q96TA2 773 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 GAS2L1Q99501 681 aaPredicted RBP13.25□□□□□ -0.29
YBX3-217ENST00000546164 GCOM2Q9BZD3 368 aaPredicted RBP13.25□□□□□ -0.29
YBX3-217ENST00000546164 RAB34Q9BZG1 259 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 RGS18Q9NS28 235 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 C1orf112Q9NSG2 853 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 SSUH2Q9Y2M2 353 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 STK24Q9Y6E0 443 aa13.25□□□□□ -0.29
YBX3-217ENST00000546164 C9IYK1 514 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 MGEA5O60502 916 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 MED24O75448 989 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 DGAT1O75907 488 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 UPP2O95045 317 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 STAG3L1P0CL83 205 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 POU3F3P20264 500 aaPredicted RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 SARSP49591 514 aaKnown RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 RARRES1P49788 294 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 FAM189BP81408 668 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 ATP2C1P98194 919 aaPredicted RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 SLC24A5Q71RS6 500 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 NLRP7Q8WX94 980 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 PSPC1Q8WXF1 523 aaKnown RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 ZNF689Q96CS4 500 aaPredicted RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 SCLT1Q96NL6 688 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 SAMD11Q96NU1 681 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 NACC1Q96RE7 527 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 ADAM2Q99965 735 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 INO80BQ9C086 356 aaPredicted RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 XPNPEP1Q9NQW7 623 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 DBR1Q9UK59 544 aaKnown RBP13.24□□□□□ -0.29
YBX3-217ENST00000546164 COL4A3BPQ9Y5P4 624 aa13.24□□□□□ -0.29
YBX3-217ENST00000546164 ADGRA3Q8IWK6 1321 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 A0A087WZ62 844 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 EPOPA6NHQ4 379 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 ASAP2O43150 1006 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 DGKIO75912 1065 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 IL17AQ16552 155 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 ARL6IP4Q66PJ3 421 aaKnown RBP13.23□□□□□ -0.29
YBX3-217ENST00000546164 SPRED2Q7Z698 418 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 RHPN2Q8IUC4 686 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 MAFAQ8NHW3 353 aaPredicted RBP13.23□□□□□ -0.29
YBX3-217ENST00000546164 PIGOQ8TEQ8 1089 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 PRPF31Q8WWY3 499 aaKnown RBP13.23□□□□□ -0.29
YBX3-217ENST00000546164 ARNTL2Q8WYA1 636 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 TMEM143Q96AN5 459 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 ZNF668Q96K58 619 aaPredicted RBP13.23□□□□□ -0.29
YBX3-217ENST00000546164 MTRQ99707 1265 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 FDXACB1Q9BRP7 624 aaPredicted RBP13.23□□□□□ -0.29
YBX3-217ENST00000546164 ELAC1Q9H777 363 aaKnown RBP13.23□□□□□ -0.29
YBX3-217ENST00000546164 ATP6V0A4Q9HBG4 840 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 IFT122Q9HBG6 1241 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 LRWD1Q9UFC0 647 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 LOXHD1Q8IVV2 1947 aa13.23□□□□□ -0.29
YBX3-217ENST00000546164 DENND3A2RUS2 1198 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 BMP15O95972 392 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 LINC00271P0C7V0 271 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 SYT1P21579 422 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 SFPQP23246 707 aaKnown RBP eCLIP13.22□□□□□ -0.29
YBX3-217ENST00000546164 POU5F1BQ06416 359 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 LAMTOR4Q0VGL1 99 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 MXD4Q14582 209 aaPredicted RBP13.22□□□□□ -0.29
YBX3-217ENST00000546164 POTEGQ6S5H5 508 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms