RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 RAB20Q9NX57 234 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 BARHL2Q9NY43 387 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 PRR12Q9ULL5 1215 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 STK36Q9NRP7 1315 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 DCDC2CA8MYV0 355 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 NDUFAB1O14561 156 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 HNRNPH1P31943 449 aaKnown RBP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 TPD52P55327 224 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC144BQ3MJ40 725 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 RUFY4Q6ZNE9 571 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 RNF180Q86T96 592 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC105Q8IYK2 499 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 VPS52Q8N1B4 723 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 OR6J1Q8NGC5 347 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CCDC110Q8TBZ0 833 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 BCAS4Q8TDM0 211 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CNTNAP5Q8WYK1 1306 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 EPSTI1Q96J88 318 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 GCOM2Q9BZD3 368 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 VPS33BQ9H267 617 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 POLR3EQ9NVU0 708 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 MAD2L2Q9UI95 211 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 FAM184BQ9ULE4 1060 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 MEIS1O00470 390 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CEP104O60308 925 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 ZNF18P17022 549 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 GAP43P17677 238 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 RCAN1P53805 252 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CORO7P57737 925 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 ZKSCAN8Q15776 578 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 GRAMD1CQ8IYS0 662 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 C7orf43Q8WVR3 580 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 CFAP57Q96MR6 1250 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 TSPYL2Q9H2G4 693 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 NKIRAS1Q9NYS0 192 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 IPO11Q9UI26 975 aaKnown RBP9.28□□□□□ -0.92
CLIP1-218ENST00000545889 TACC3Q9Y6A5 838 aa9.28□□□□□ -0.92
CLIP1-218ENST00000545889 C19orf81C9J6K1 198 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 MAP3K7O43318 606 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 CTSHP09668 335 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 SETSIPP0DME0 302 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 NT5C2P49902 561 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 BFSP1Q12934 665 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 MOB2Q70IA6 237 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 PEX26Q7Z412 305 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 ARMC2Q8NEN0 867 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 MAIP1Q8WWC4 291 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 TEX13BQ9BXU2 312 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 TRIM31Q9BZY9 425 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 JMJD4Q9H9V9 463 aa9.27□□□□□ -0.92
CLIP1-218ENST00000545889 EFCAB8A8MWE9 144 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 HUS1O60921 280 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 JAK3P52333 1124 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 IRX1P78414 480 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 FAM83AQ86UY5 434 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 LDHDQ86WU2 507 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 MCPH1Q8NEM0 835 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 GTF3C2Q8WUA4 911 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 PARD6BQ9BYG5 372 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 TJP1Q07157 1748 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 AP5Z1O43299 807 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 GTPBP6O43824 516 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 CTNND1O60716 968 aaKnown RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 SRGAP2BP0DMP2 458 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 FKBP1AP62942 108 aaKnown RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 PPP4R1Q8TF05 950 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 LARP4BQ92615 738 aaKnown RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 MSTO1Q9BUK6 570 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 LSM14BQ9BX40 385 aaKnown RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 SPZ1Q9BXG8 430 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 TMEM206Q9H813 350 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 ZWINTO95229 277 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 CMA1P23946 247 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 ETF1P62495 437 aaKnown RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 MYLK4Q86YV6 388 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 CCNYQ8ND76 341 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 GPRC5AQ8NFJ5 357 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 BAG1Q99933 345 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-218ENST00000545889 AGXT2Q9BYV1 514 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 EHD4Q9H223 541 aa9.27□□□□□ -0.93
CLIP1-218ENST00000545889 GOLGA8SH3BPF8 625 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 TRAPPC3O43617 180 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 PPFIA4O75335 1185 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 ALDH1A1P00352 501 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 KRT76Q01546 638 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 ARMC3Q5W041 872 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 SLFN12LQ6IEE8 588 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 SYCE1Q8N0S2 351 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 ATRIPQ8WXE1 791 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 ATP2A3Q93084 1043 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 PCIF1Q9H4Z3 704 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 FAM217BQ9NTX9 383 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-218ENST00000545889 TBC1D22BQ9NU19 505 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 SAMD15Q9P1V8 674 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 PCDHA6Q9UN73 950 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 PCDHA8Q9Y5H6 950 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 NHSQ6T4R5 1651 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 F8W8V4 182 aa9.26□□□□□ -0.93
CLIP1-218ENST00000545889 KIF3CO14782 793 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms