RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SERPINI1Q99574 410 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 DDX56Q9NY93 547 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 NEURL4Q96JN8 1562 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 TYW5A2RUC4 315 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 TEX33O43247 280 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 ZRANB2O95218 330 aaKnown RBP eCLIP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 MMEP08473 750 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 PMS2P54278 862 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 SESN3P58005 492 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 PDCD7Q8N8D1 485 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 ZC3H15Q8WU90 426 aaKnown RBP13.42□□□□□ -0.26
COL4A6-209ENST00000545689 POTEB3A0JP26 581 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 POTECB2RU33 542 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 GGCXP38435 758 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 TAP1Q03518 808 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 POTEBQ6S5H4 581 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 DNAAF3Q8N9W5 541 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 PIGOQ8TEQ8 1089 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 RFFLQ8WZ73 363 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 HOXC10Q9NYD6 342 aa13.42□□□□□ -0.26
COL4A6-209ENST00000545689 USP27XA6NNY8 438 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 EYA4O95677 639 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CASP1P29466 404 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 QARSP47897 775 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SP8Q8IXZ3 490 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CYP26B1Q9NR63 512 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 IP6K2Q9UHH9 426 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 BAG5Q9UL15 447 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 PNMA3Q9UL41 463 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 NCOA3Q9Y6Q9 1424 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SYNJ2BP-COX16A0A087WUM0 186 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 TBX3O15119 743 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CA4P22748 312 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 TMEM60Q9H2L4 133 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 TMEM260Q9NX78 707 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 DONSONQ9NYP3 566 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 COX16Q9P0S2 106 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CD58P19256 250 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SMARCA1P28370 1054 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 COG7P83436 770 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CCZ1BP86790 482 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CCZ1P86791 482 aaPredicted RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 RCN2Q14257 317 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 QRICH1Q2TAL8 776 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 BBS9Q3SYG4 887 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 ZNF564Q8TBZ8 553 aaPredicted RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 NSUN6Q8TEA1 469 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 PRPF31Q8WWY3 499 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 DHX38Q92620 1227 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 TTC1Q99614 292 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 HERC5Q9UII4 1024 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 CTIFO43310 598 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SRGAP2O75044 1071 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 RHOBTB3O94955 611 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SKIP12755 728 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SOX5P35711 763 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 PPP2R2AP63151 447 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 EPHA7Q15375 998 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 FAM133BQ5BKY9 247 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SYDE1Q6ZW31 735 aaPredicted RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 NSUN4Q96CB9 384 aaKnown RBP13.41□□□□□ -0.26
COL4A6-209ENST00000545689 APOL6Q9BWW8 343 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 DRC3Q9H069 523 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 AGLP35573 1532 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 SSU72P8A0A1W2PR75 194 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 RAD17O75943 681 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 PSMC5P62195 406 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 RASGRP2Q7LDG7 609 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 ADSSL1Q8N142 457 aa13.41□□□□□ -0.26
COL4A6-209ENST00000545689 UBE4BO95155 1302 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SRGNP10124 158 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SAT1P21673 171 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SF3B3Q15393 1217 aaKnown RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 TRIP13Q15645 432 aaPredicted RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 KYAT1Q16773 422 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 DALRD3Q5D0E6 543 aaKnown RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SRBD1Q8N5C6 995 aaKnown RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 KCND2Q9NZV8 630 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 C1orf167Q5SNV9 1468 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 MAP3K7O43318 606 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 ECE2O60344 883 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 TADA3O75528 432 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 CFAP36Q96G28 342 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 RMDN3Q96TC7 470 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 MTRQ99707 1265 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SAYSD1Q9NPB0 183 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L15C9J2P7 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L13C9JLJ4 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L11C9JVI0 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L18D6R9N7 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L22D6RA61 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L17D6RBQ6 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L19D6RCP7 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L20D6RJB6 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 HNRNPH2P55795 449 aaKnown RBP13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SATB1Q01826 763 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 USP17L24Q0WX57 530 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 SCARF1Q14162 830 aa13.4□□□□□ -0.26
COL4A6-209ENST00000545689 DRAP1Q14919 205 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms