RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 ARL2P36404 184 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 NDUFA8P51970 172 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 MRPS6P82932 125 aaKnown RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 FAM160A1Q05DH4 1040 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 TFDP1Q14186 410 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 MCM6Q14566 821 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 PCBP1Q15365 356 aaKnown RBP eCLIP13.51□□□□□ -0.25
DDX55-210ENST00000543016 ODR4Q5SWX8 454 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 CNNM4Q6P4Q7 775 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 RUFY4Q6ZNE9 571 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 GPBP1Q86WP2 473 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 ELOA2Q8IYF1 753 aaPredicted RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 C7orf61Q8IZ16 206 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 TMEM199Q8N511 208 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 DHX38Q92620 1227 aaKnown RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 DHX58Q96C10 678 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 TIGD1Q96MW7 591 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 SH2D3AQ9BRG2 576 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 INO80BQ9C086 356 aaPredicted RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 FAM49AQ9H0Q0 323 aaPredicted RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 XPNPEP1Q9NQW7 623 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 PRDM5Q9NQX1 630 aaPredicted RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 HOOK1Q9UJC3 728 aaKnown RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 AKT3Q9Y243 479 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 A0A087X0B3 334 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 ZNF202O95125 648 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 KRT18P05783 430 aaKnown RBP13.5□□□□□ -0.25
DDX55-210ENST00000543016 PFKMP08237 780 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 ABCD1P33897 745 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 CLCN3P51790 818 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 CRYBB1P53674 252 aaPredicted RBP13.5□□□□□ -0.25
DDX55-210ENST00000543016 FAM102BQ5T8I3 360 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 MFSD5Q6N075 450 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 LRRC8DQ7L1W4 858 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 LRRC71Q8N4P6 559 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 SLC17A8Q8NDX2 589 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 PRPF31Q8WWY3 499 aaKnown RBP13.5□□□□□ -0.25
DDX55-210ENST00000543016 IFT74Q96LB3 600 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 NFKBIZQ9BYH8 718 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 CELF4Q9BZC1 486 aaKnown RBP13.5□□□□□ -0.25
DDX55-210ENST00000543016 SSUH2Q9Y2M2 353 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 COL4A3BPQ9Y5P4 624 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 TRPV2Q9Y5S1 764 aa13.5□□□□□ -0.25
DDX55-210ENST00000543016 TRIP12Q14669 1992 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 TRIM43BA6NCK2 446 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 H0YCG3 227 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 IQCF3P0C7M6 154 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 PTMSP20962 102 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 GPC3P51654 580 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 MLLT1Q03111 559 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 LAMTOR4Q0VGL1 99 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 ARSHQ5FYA8 562 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 ZNF618Q5T7W0 954 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 IFNLR1Q8IU57 520 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 RHPN2Q8IUC4 686 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 RPUSD2Q8IZ73 545 aaKnown RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 FMR1NBQ8N0W7 255 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 CNNM3Q8NE01 707 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 ENGASEQ8NFI3 743 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 TMEM143Q96AN5 459 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 TRIM43Q96BQ3 446 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 C7orf25Q9BPX7 421 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 LBHD1Q9BQE6 289 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 RUSC1Q9BVN2 902 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 GCOM2Q9BZD3 368 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 POLR3FQ9H1D9 316 aaPredicted RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 LARSQ9P2J5 1176 aaKnown RBP13.49□□□□□ -0.25
DDX55-210ENST00000543016 SEL1LQ9UBV2 794 aa13.49□□□□□ -0.25
DDX55-210ENST00000543016 BRCA2P51587 3418 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 ACTN4O43707 911 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 KINO60870 393 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 HIP1RO75146 1068 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 TBCAO75347 108 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 GPR32O75388 356 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 CHRNA1P02708 482 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 GAP43P17677 238 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 EIF4BP23588 611 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 NAMPTP43490 491 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 PHKA2P46019 1235 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 ZNF131P52739 623 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 SMTNP53814 917 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 NLRP11P59045 1033 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 MGAT3Q09327 533 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 DMP1Q13316 513 aaPredicted RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 PPIGQ13427 754 aaKnown RBP eCLIP13.48□□□□□ -0.252e-6■□□□□ 8.5
DDX55-210ENST00000543016 DHX8Q14562 1220 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 LONRF3Q496Y0 759 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 CHRDL2Q6WN34 429 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 KRBA2Q6ZNG9 492 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 SRGAP1Q7Z6B7 1085 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 SH3RF1Q7Z6J0 888 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 LRRC15Q8TF66 581 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 SPIRE2Q8WWL2 714 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 DDX12PQ92771 950 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 KCNN1Q92952 543 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 WNT8BQ93098 351 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 NTPCRQ9BSD7 190 aaKnown RBP13.48□□□□□ -0.25
DDX55-210ENST00000543016 C2orf40Q9H1Z8 148 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 ADAMTS10Q9H324 1103 aa13.48□□□□□ -0.25
DDX55-210ENST00000543016 GOLPH3LQ9H4A5 285 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms