RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CCDC34Q96HJ3 373 aa19■□□□□ 0.63
LIG1-204ENST00000542460 NOC4LQ9BVI4 516 aaKnown RBP19■□□□□ 0.63
LIG1-204ENST00000542460 HIPK3Q9H422 1215 aa19■□□□□ 0.63
LIG1-204ENST00000542460 MYMKA6NI61 221 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 PITPNM1O00562 1244 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 ASAP2O43150 1006 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 NR1I2O75469 434 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 MCM4P33991 863 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 ARL2P36404 184 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 RAD51AP2Q09MP3 1159 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 MXD4Q14582 209 aaPredicted RBP18.99■□□□□ 0.63
LIG1-204ENST00000542460 KANK3Q6NY19 840 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 STAMQ92783 540 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 KIFAP3Q92845 792 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 DRC1Q96MC2 740 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 TIGD1Q96MW7 591 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 GPRC5CQ9NQ84 441 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 PRDM5Q9NQX1 630 aaPredicted RBP18.99■□□□□ 0.63
LIG1-204ENST00000542460 ODF2LQ9ULJ1 636 aa18.99■□□□□ 0.63
LIG1-204ENST00000542460 KAT6AQ92794 2004 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 KIAA0355O15063 1070 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 HIP1RO75146 1068 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 VTNP04004 478 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 CKBP12277 381 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 GIT2Q14161 759 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 SH3RF1Q7Z6J0 888 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 RHPN2Q8IUC4 686 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 C7orf61Q8IZ16 206 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 DDX12PQ92771 950 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 PAGE5Q96GU1 130 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 POLR3FQ9H1D9 316 aaPredicted RBP18.98■□□□□ 0.63
LIG1-204ENST00000542460 PRKAG2Q9UGJ0 569 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 COL4A3BPQ9Y5P4 624 aa18.98■□□□□ 0.63
LIG1-204ENST00000542460 NPHP3-ACAD11A0A0J9YXS1 232 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 M0QZ92 97 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 KINO60870 393 aaKnown RBP18.97■□□□□ 0.63
LIG1-204ENST00000542460 SELPP16109 830 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 AFMP43652 599 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 MRPS6P82932 125 aaKnown RBP18.97■□□□□ 0.63
LIG1-204ENST00000542460 TMEM62Q0P6H9 643 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 LAMTOR4Q0VGL1 99 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 ZNF618Q5T7W0 954 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 DYMQ7RTS9 669 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 C7orf25Q9BPX7 421 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 REEP2Q9BRK0 252 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 TRIM9Q9C026 710 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 POLD4Q9HCU8 107 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 DACT1Q9NYF0 836 aa18.97■□□□□ 0.63
LIG1-204ENST00000542460 TRIM43BA6NCK2 446 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 RSPH10B2B2RC85 870 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 MYL1P05976 194 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 RSPH10BP0C881 870 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 NLRP11P59045 1033 aaKnown RBP18.96■□□□□ 0.63
LIG1-204ENST00000542460 MAPK7Q13164 816 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 FAM26DQ5JW98 314 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 CNNM4Q6P4Q7 775 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 DAW1Q8N136 415 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 TRIM43Q96BQ3 446 aaPredicted RBP18.96■□□□□ 0.63
LIG1-204ENST00000542460 DNAJC19Q96DA6 116 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 CELF4Q9BZC1 486 aaKnown RBP18.96■□□□□ 0.63
LIG1-204ENST00000542460 PPP1R12CQ9BZL4 782 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 C17orf75Q9HAS0 396 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 LOXHD1Q8IVV2 1947 aa18.96■□□□□ 0.63
LIG1-204ENST00000542460 ARID2Q68CP9 1835 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 TBCAO75347 108 aaKnown RBP18.95■□□□□ 0.62
LIG1-204ENST00000542460 GPR32O75388 356 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 TIMP1P01033 207 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 CHRNA1P02708 482 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 CTSHP09668 335 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 RAG1P15918 1043 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 GLRA2P23416 452 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 GPC3P51654 580 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 CACNB1Q02641 598 aaPredicted RBP18.95■□□□□ 0.62
LIG1-204ENST00000542460 KIZQ2M2Z5 673 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 LRRC8DQ7L1W4 858 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 ZNF410Q86VK4 478 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 ASAP3Q8TDY4 903 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 IFT74Q96LB3 600 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 ADAMTS10Q9H324 1103 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 KCNG1Q9UIX4 513 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 TRPV2Q9Y5S1 764 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 NR2E3Q9Y5X4 410 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 CDY2AQ9Y6F7 541 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 UMODL1Q5DID0 1318 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.95■□□□□ 0.62
LIG1-204ENST00000542460 SFI1A8K8P3 1242 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 FAM13AO94988 1023 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 SRGAP2CP0DJJ0 459 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 CYP2C18P33260 490 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 POU5F1BQ06416 359 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 MGAT3Q09327 533 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 TFDP1Q14186 410 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 PPP2R5AQ15172 486 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 KSR1Q8IVT5 923 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 ELOA2Q8IYF1 753 aaPredicted RBP18.95■□□□□ 0.62
LIG1-204ENST00000542460 GRAMD1CQ8IYS0 662 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 NLRP7Q8WX94 980 aa18.95■□□□□ 0.62
LIG1-204ENST00000542460 LARSQ9P2J5 1176 aaKnown RBP18.95■□□□□ 0.62
LIG1-204ENST00000542460 HOOK1Q9UJC3 728 aaKnown RBP18.95■□□□□ 0.62
LIG1-204ENST00000542460 GINS2Q9Y248 185 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms