RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CDC25BP30305 580 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 NMT1P30419 496 aaKnown RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 ABCD1P33897 745 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 UBASH3AP57075 661 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 DMP1Q13316 513 aaPredicted RBP19.56■□□□□ 0.72
CLIP1-215ENST00000541108 FAM114A1Q8IWE2 563 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 ANKRD20A12PQ8NF67 263 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 GPRC5CQ9NQ84 441 aa19.56■□□□□ 0.72
CLIP1-215ENST00000541108 H3BRB1 525 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 PRPF6O94906 941 aaKnown RBP19.55■□□□□ 0.72
CLIP1-215ENST00000541108 TPM3P06753 285 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 CYBAP13498 195 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 MARK3P27448 753 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 HOXD13P35453 343 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 NCKAP1LP55160 1127 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 GTF2BQ00403 316 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 TBC1D8BQ0IIM8 1120 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 BRDTQ58F21 947 aaPredicted RBP19.55■□□□□ 0.72
CLIP1-215ENST00000541108 TCP11X2Q5H9J9 407 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 TLK2Q86UE8 772 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 IRF2BP1Q8IU81 584 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 KCNN1Q92952 543 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 ERO1AQ96HE7 468 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 TUT1Q9H6E5 874 aaKnown RBP19.55■□□□□ 0.72
CLIP1-215ENST00000541108 TYW1Q9NV66 732 aaKnown RBP19.55■□□□□ 0.72
CLIP1-215ENST00000541108 IFNKQ9P0W0 207 aa19.55■□□□□ 0.72
CLIP1-215ENST00000541108 CPT1AP50416 773 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 PEX3P56589 373 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 CAP1Q01518 475 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 HSP90AA4PQ58FG1 418 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 ZNF484Q5JVG2 852 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 NELFCDQ8IXH7 590 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 IFT74Q96LB3 600 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 XPO4Q9C0E2 1151 aaKnown RBP19.54■□□□□ 0.72
CLIP1-215ENST00000541108 RNPEPQ9H4A4 650 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 TMEM206Q9H813 350 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 LIMA1Q9UHB6 759 aaKnown RBP19.54■□□□□ 0.72
CLIP1-215ENST00000541108 TRPC6Q9Y210 931 aa19.54■□□□□ 0.72
CLIP1-215ENST00000541108 IGKV6-21A0A0C4DH24 114 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 ZBTB42B2RXF5 422 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 KCNJ18B7U540 433 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 H0YCG3 227 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 K7ENM7 598 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 DUSP11O75319 330 aaKnown RBP19.53■□□□□ 0.72
CLIP1-215ENST00000541108 ARL2P36404 184 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 KCNJ12Q14500 433 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 PPP2R5AQ15172 486 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 ZC2HC1CQ53FD0 456 aaPredicted RBP19.53■□□□□ 0.72
CLIP1-215ENST00000541108 APTXQ7Z2E3 356 aaKnown RBP19.53■□□□□ 0.72
CLIP1-215ENST00000541108 HAUS6Q7Z4H7 955 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 CD99L2Q8TCZ2 262 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 HVCN1Q96D96 273 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 CEP63Q96MT8 703 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 AP5M1Q9H0R1 490 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 MAGEC2Q9UBF1 373 aaPredicted RBP19.53■□□□□ 0.72
CLIP1-215ENST00000541108 COL1A2P08123 1366 aa19.53■□□□□ 0.72
CLIP1-215ENST00000541108 CALUO43852 315 aaPredicted RBP19.52■□□□□ 0.72
CLIP1-215ENST00000541108 FKTNO75072 461 aa19.52■□□□□ 0.72
CLIP1-215ENST00000541108 NPTX2P47972 431 aa19.52■□□□□ 0.72
CLIP1-215ENST00000541108 NFIL3Q16649 462 aa19.52■□□□□ 0.72
CLIP1-215ENST00000541108 IER5Q5VY09 327 aa19.52■□□□□ 0.72
CLIP1-215ENST00000541108 ZC3H3Q8IXZ2 948 aaKnown RBP19.52■□□□□ 0.72
CLIP1-215ENST00000541108 TCP11Q8WWU5 503 aa19.52■□□□□ 0.72
CLIP1-215ENST00000541108 A0A1B0GTH6 734 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 RPL13P26373 211 aaKnown RBP19.52■□□□□ 0.71
CLIP1-215ENST00000541108 PRMT2P55345 433 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 SNRPFP62306 86 aaKnown RBP19.52■□□□□ 0.71
CLIP1-215ENST00000541108 MAP2K1Q02750 393 aaPredicted RBP19.52■□□□□ 0.71
CLIP1-215ENST00000541108 LRRC55Q6ZSA7 311 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 FILIP1Q7Z7B0 1213 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 TMEM161BQ8NDZ6 487 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 TRPV1Q8NER1 839 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 GOLGA5Q8TBA6 731 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 PXYLP1Q8TE99 480 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 NAP1L5Q96NT1 182 aaPredicted RBP19.52■□□□□ 0.71
CLIP1-215ENST00000541108 POLR3FQ9H1D9 316 aaPredicted RBP19.52■□□□□ 0.71
CLIP1-215ENST00000541108 KMT5AQ9NQR1 393 aa19.52■□□□□ 0.71
CLIP1-215ENST00000541108 CGNQ9P2M7 1197 aaKnown RBP19.52■□□□□ 0.71
CLIP1-215ENST00000541108 CCDC169A6NNP5 214 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 MAGEB2O15479 319 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 SEPT4O43236 478 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 GNA14O95837 355 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 INSRRP14616 1297 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 KCNA1Q09470 495 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 ADAM9Q13443 819 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 NR1I3Q14994 352 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 FILIP1LQ4L180 1135 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 HS2ST1Q7LGA3 356 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 TMEM174Q8WUU8 243 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 BSNDQ8WZ55 320 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 TMEM143Q96AN5 459 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 GBP3Q9H0R5 595 aa19.51■□□□□ 0.71
CLIP1-215ENST00000541108 SLC16A4O15374 487 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 TGFB1I1O43294 461 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 F2P00734 622 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 ZNF286BP0CG31 522 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 NAMPTP43490 491 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 SOX10P56693 466 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 NKX3-2P78367 333 aa19.5■□□□□ 0.71
CLIP1-215ENST00000541108 CACNB2Q08289 660 aaPredicted RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms