RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 KRT25Q7Z3Z0 450 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SEPT1Q8WYJ6 367 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 BHMTQ93088 406 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 NACA2Q9H009 215 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 KCNG1Q9UIX4 513 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 DNM3Q9UQ16 869 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 GOLGA8TH3BQL2 631 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 IDH3BO43837 385 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 ORC4O43929 436 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 UBOX5O94941 541 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 LDHCP07864 332 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 ALOX15P16050 662 aaPredicted RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 RGS21Q2M5E4 152 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 MDM1Q8TC05 714 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 SCG3Q8WXD2 468 aaKnown RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 INPP5DQ92835 1189 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 TSSK1BQ9BXA7 367 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 COG4Q9H9E3 785 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 KIF17Q9P2E2 1029 aa9.33□□□□□ -0.92
YBX3-208ENST00000540447 MTO1Q9Y2Z2 717 aaKnown RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 HBS1LQ9Y450 684 aaKnown RBP9.33□□□□□ -0.92
YBX3-208ENST00000540447 TBC1D4O60343 1298 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 LDHAP00338 332 aaKnown RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 FGFR4P22455 802 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PEX5P50542 639 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 KPNA2P52292 529 aaKnown RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 SNX30Q5VWJ9 437 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PCNX4Q63HM2 1172 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 WDR93Q6P2C0 686 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 NCLNQ969V3 563 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 SLC10A4Q96EP9 437 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 SENP1Q9P0U3 644 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 GAS7O60861 476 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 BCL10O95999 233 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 CDH3P22223 829 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PLOD1Q02809 727 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 WLSQ5T9L3 541 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 CRELD2Q6UXH1 353 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 NME9Q86XW9 330 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 RDH13Q8NBN7 331 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PLGRKTQ9HBL7 147 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 TTLL3Q9Y4R7 772 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 FAM25AB3EWG3 89 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 FAM25CB3EWG5 89 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 FAM25GB3EWG6 89 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 FOSL2P15408 326 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 GET4Q7L5D6 327 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 ZCCHC7Q8N3Z6 543 aaKnown RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 LPIN2Q92539 896 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 CMTM5Q96DZ9 223 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 SIRT1Q96EB6 747 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 B3GALT6Q96L58 329 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 DCUN1D5Q9BTE7 237 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 EMC3Q9P0I2 261 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 TRMT112Q9UI30 125 aaKnown RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 DBR1Q9UK59 544 aaKnown RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 IQSEC3Q9UPP2 1182 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 SMG5Q9UPR3 1016 aaKnown RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 C9orf84Q5VXU9 1444 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 RPS6KA5O75582 802 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PPARGP37231 505 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 KRT17Q04695 432 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PGBD1Q96JS3 809 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 ZDHHC9Q9Y397 364 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 TRIM43BA6NCK2 446 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 O00370 1275 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 RTN3O95197 1032 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 SCNN1BP51168 640 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 ATAD3BQ5T9A4 648 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 LMBR1LQ6UX01 489 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 MAGEB6Q8N7X4 407 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 MTERF3Q96E29 417 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 TRABDQ9H4I3 376 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 PANK4Q9NVE7 773 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 RABL2AQ9UBK7 228 aaPredicted RBP9.32□□□□□ -0.92
YBX3-208ENST00000540447 STK24Q9Y6E0 443 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 CARMIL3Q8ND23 1372 aa9.32□□□□□ -0.92
YBX3-208ENST00000540447 ZMYM6O95789 1325 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ADGRA3Q8IWK6 1321 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 TMEM120BA0PK00 339 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 TRIM64CA6NLI5 447 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 BTBD18B2RXH4 712 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 CYTH3O43739 400 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 PRPF6O94906 941 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 TUFMP49411 452 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 SLC34A1Q06495 639 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 RFX6Q8HWS3 928 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 DSCC1Q9BVC3 393 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 OSBPL8Q9BZF1 889 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 ADAMTS1Q9UHI8 967 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 UHRF1BP1Q6BDS2 1440 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 MAFGO15525 162 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 KSR2Q6VAB6 950 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 RBM41Q96IZ5 413 aaKnown RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 CLEC4MQ9H2X3 399 aaPredicted RBP9.31□□□□□ -0.92
YBX3-208ENST00000540447 KLHL33A6NCF5 533 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 IMPDH2P12268 514 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 CD19P15391 556 aa9.31□□□□□ -0.92
YBX3-208ENST00000540447 CHRNA3P32297 505 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms