RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CFAP221Q4G0U5 840 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 FAM102BQ5T8I3 360 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 ARHGEF26Q96DR7 871 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 BTBD6Q96KE9 485 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 NAP1L4Q99733 375 aaKnown RBP18.44■□□□□ 0.54
USP28-208ENST00000540438 TMOD4Q9NZQ9 345 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 STIM2Q9P246 746 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 TRIM66O15016 1216 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 LCA5LO95447 670 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 GALCP54803 685 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 RPS6P62753 249 aaKnown RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 SPDYE2Q495Y8 402 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 BTNL9Q6UXG8 535 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 NIM1KQ8IY84 436 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 FIZ1Q96SL8 496 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 TEKT3Q9BXF9 490 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 DPH5Q9H2P9 285 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 UBE2TQ9NPD8 197 aaPredicted RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 PLCB1Q9NQ66 1216 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 HERC5Q9UII4 1024 aaKnown RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 RPL13P26373 211 aaKnown RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 RPS6KA1Q15418 735 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 NBPF12Q5TAG4 269 aaPredicted RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 PHLDB3Q6NSJ2 640 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 CCDC70Q6NSX1 233 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 POTEAQ6S8J7 498 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 HS2ST1Q7LGA3 356 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 FRMD5Q7Z6J6 570 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 TAF4BQ92750 862 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 TCEAL9Q9UHQ7 104 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 FAM184BQ9ULE4 1060 aa18.43■□□□□ 0.54
USP28-208ENST00000540438 MRPL11Q9Y3B7 192 aaKnown RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 CTDP1Q9Y5B0 961 aaPredicted RBP18.43■□□□□ 0.54
USP28-208ENST00000540438 PSMC2P35998 433 aaKnown RBP18.42■□□□□ 0.54
USP28-208ENST00000540438 FMO5P49326 533 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 AIPL1Q9NZN9 384 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 AMACRQ9UHK6 382 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 ZNF536O15090 1300 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 EMSYQ7Z589 1322 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 VIL1P09327 827 aaKnown RBP18.42■□□□□ 0.54
USP28-208ENST00000540438 KCNA3P22001 575 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 ARHGEF19Q8IW93 802 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 SLC5A5Q92911 643 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 POLR3CQ9BUI4 534 aaPredicted RBP18.42■□□□□ 0.54
USP28-208ENST00000540438 FRMD4BQ9Y2L6 1034 aa18.42■□□□□ 0.54
USP28-208ENST00000540438 ZC3H4Q9UPT8 1303 aaKnown RBP18.42■□□□□ 0.54
USP28-208ENST00000540438 TBX3O15119 743 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 MAP2K1Q02750 393 aaPredicted RBP18.41■□□□□ 0.54
USP28-208ENST00000540438 PPP3CAQ08209 521 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 PEX26Q7Z412 305 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 CASKIN2Q8WXE0 1202 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 BACH1O14867 736 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 SEMA3FQ13275 785 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 METTL13Q8N6R0 699 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 ATG4CQ96DT6 458 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 GMLQ99445 158 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 THAP2Q9H0W7 228 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 RANBP17Q9H2T7 1088 aaKnown RBP18.41■□□□□ 0.54
USP28-208ENST00000540438 PJA2O43164 708 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 MEI1Q5TIA1 1274 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 UHMK1Q8TAS1 419 aaKnown RBP18.41■□□□□ 0.54
USP28-208ENST00000540438 ZNF668Q96K58 619 aaPredicted RBP18.41■□□□□ 0.54
USP28-208ENST00000540438 NACC1Q96RE7 527 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 MXRA8Q9BRK3 442 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 PI4K2AQ9BTU6 479 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 FAM107BQ9H098 131 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 MYOZ2Q9NPC6 264 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 PPP1R9AQ9ULJ8 1098 aa18.41■□□□□ 0.54
USP28-208ENST00000540438 FLT3P36888 993 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 MTMR1Q13613 665 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 MAP9Q49MG5 647 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 XKR9Q5GH70 373 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 PLEKHO2Q8TD55 490 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 MRIQ9BWK5 157 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 H2AFZP0C0S5 128 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 DLATP10515 647 aaKnown RBP18.4■□□□□ 0.54
USP28-208ENST00000540438 STAT1P42224 750 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 MAPK7Q13164 816 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 DAB2IPQ5VWQ8 1189 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 MOXD1Q6UVY6 613 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 H2AFVQ71UI9 128 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 CYFIP1Q7L576 1253 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 GOLGA6L1Q8N7Z2 621 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 DHX38Q92620 1227 aaKnown RBP18.4■□□□□ 0.54
USP28-208ENST00000540438 INTS2Q9H0H0 1204 aaKnown RBP18.4■□□□□ 0.54
USP28-208ENST00000540438 LRRC4CQ9HCJ2 640 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 BCCIPQ9P287 314 aaKnown RBP eCLIP18.4■□□□□ 0.54
USP28-208ENST00000540438 ATRNL1Q5VV63 1379 aa18.4■□□□□ 0.54
USP28-208ENST00000540438 ZEB2O60315 1214 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 BUB1BO60566 1050 aaPredicted RBP18.39■□□□□ 0.54
USP28-208ENST00000540438 MMP14P50281 582 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 MYL7Q01449 175 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 LLGL2Q6P1M3 1020 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 CBWD2Q8IUF1 395 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 AFAP1L1Q8TED9 768 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 AENQ8WTP8 325 aaKnown RBP18.39■□□□□ 0.54
USP28-208ENST00000540438 RMDN3Q96TC7 470 aa18.39■□□□□ 0.54
USP28-208ENST00000540438 GOLGA6CA6NDK9 693 aa18.39■□□□□ 0.53
USP28-208ENST00000540438 ECM2O94769 699 aaPredicted RBP18.39■□□□□ 0.53
USP28-208ENST00000540438 GOLGA6DP0CG33 693 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms