RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 IVLP07476 585 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PON1P27169 355 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 HNRNPH3P31942 346 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 SOX5P35711 763 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 GCLMP48507 274 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 HMGCS2P54868 508 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 TKFCQ3LXA3 575 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 ARSHQ5FYA8 562 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 SIAH1Q8IUQ4 282 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF280CQ8ND82 737 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 FAM212AQ96EL1 285 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 SCLT1Q96NL6 688 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 MAP3K20Q9NYL2 800 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 STIM2Q9P246 746 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 CAPN6Q9Y6Q1 641 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PGRMC1O00264 195 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PSMD10O75832 226 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PTK2Q05397 1052 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PPFIA1Q13136 1202 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 NAB2Q15742 525 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF662Q6ZS27 426 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF720Q7Z2F6 126 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 LRRC45Q96CN5 670 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 MBOAT7Q96N66 472 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 SH2D3AQ9BRG2 576 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 STK33Q9BYT3 514 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 EPB41L5Q9HCM4 733 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 AGPAT3Q9NRZ7 376 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 A0A087X0T9 212 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 FAM228BP0C875 321 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 CASP5P51878 434 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 COG2Q14746 738 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 SULF1Q8IWU6 871 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 MCPH1Q8NEM0 835 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PNKPQ96T60 521 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 KIAA1683Q9H0B3 1180 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 GABBR1Q9UBS5 961 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 HACL1Q9UJ83 578 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 RREB1Q92766 1687 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 NOP56O00567 594 aaKnown RBP11.69□□□□□ -0.54
CLIP1-213ENST00000540338 TBC1D8O95759 1140 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 PLS3P13797 630 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 KLRC1P26715 233 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 PAGR1Q9BTK6 254 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 WDR18Q9BV38 432 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 KCTD10Q9H3F6 313 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 C1orf112Q9NSG2 853 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 NRBP2Q9NSY0 501 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 LRRIQ4A6NIV6 560 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 NR3C2P08235 984 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 PRLRP16471 622 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 RFX1P22670 979 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 PDE6CP51160 858 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 MRPS25P82663 173 aaKnown RBP11.69□□□□□ -0.54
CLIP1-213ENST00000540338 KCNMA1Q12791 1236 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 BFSP1Q12934 665 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 PPP2R5EQ16537 467 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 MTERF2Q49AM1 385 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 NCAPG2Q86XI2 1143 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 SAMD3Q8N6K7 520 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 DCPSQ96C86 337 aaKnown RBP11.69□□□□□ -0.54
CLIP1-213ENST00000540338 ATG4CQ96DT6 458 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 HSD17B14Q9BPX1 270 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 TTYH3Q9C0H2 523 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 ZCCHC17Q9NP64 241 aaKnown RBP11.69□□□□□ -0.54
CLIP1-213ENST00000540338 PPP1R9AQ9ULJ8 1098 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 A0A1B0GUL6 1792 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 GUCY2CP25092 1073 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 ABCD1P33897 745 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 GUCY2FP51841 1108 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 GADL1Q6ZQY3 521 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 SLC7A3Q8WY07 619 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 GLIS2Q9BZE0 524 aaPredicted RBP11.69□□□□□ -0.54
CLIP1-213ENST00000540338 ACAD9Q9H845 621 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 AIPL1Q9NZN9 384 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 VAV3Q9UKW4 847 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 FAN1Q9Y2M0 1017 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 EMSYQ7Z589 1322 aa11.69□□□□□ -0.54
CLIP1-213ENST00000540338 DENND3A2RUS2 1198 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 C19orf81C9J6K1 198 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 PLA2G6O60733 806 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 DNAJC21Q5F1R6 531 aaKnown RBP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 SWSAP1Q6NVH7 229 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 SEPT14Q6ZU15 432 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 GLYCTKQ8IVS8 523 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 SYTL5Q8TDW5 730 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 GLG1Q92896 1179 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 ANKZF1Q9H8Y5 726 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 NAV1Q8NEY1 1877 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 TFRCP02786 760 aaKnown RBP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 PCNX4Q63HM2 1172 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 XRRA1Q6P2D8 792 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 C1orf186Q6ZWK4 172 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 BAP1Q92560 729 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 FUT8Q9BYC5 575 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 FGFBP2Q9BYJ0 223 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 ST7Q9NRC1 585 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 APEX2Q9UBZ4 518 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 PACSIN2Q9UNF0 486 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 TNRC6CQ9HCJ0 1690 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms