RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SPTBN5Q9NRC6 3674 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 IPO5O00410 1097 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 GCFC2P16383 781 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 HOXC8P31273 242 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 PBX2P40425 430 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 ZNF618Q5T7W0 954 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 ZNF658Q5TYW1 1059 aaPredicted RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 RASIP1Q5U651 963 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 SPATA1Q5VX52 437 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 TRAF7Q6Q0C0 670 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 SERINC5Q86VE9 423 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 LMBR1Q8WVP7 490 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 NAP1L4Q99733 375 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 ZNF577Q9BSK1 485 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 RAB34Q9BZG1 259 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 SAMSN1Q9NSI8 373 aaKnown RBP13.25□□□□□ -0.29
CLIP1-208ENST00000537004 LRWD1Q9UFC0 647 aa13.25□□□□□ -0.29
CLIP1-208ENST00000537004 ZBBXA8MT70 800 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 NBNO60934 754 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 SELPP16109 830 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 CDK11BP21127 795 aaKnown RBP13.24□□□□□ -0.29
CLIP1-208ENST00000537004 THPOP40225 353 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 PTK7Q13308 1070 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 PDIA5Q14554 519 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 MBTPS1Q14703 1052 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 LRRC8DQ7L1W4 858 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 CAGE1Q8TC20 777 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 HERVK_113Q902F9 699 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 CALML4Q96GE6 196 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 OSBPL7Q9BZF2 842 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 NFASCO94856 1347 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 TET1Q8NFU7 2136 aa13.24□□□□□ -0.29
CLIP1-208ENST00000537004 POTEMA6NI47 508 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 CIITAP33076 1130 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 USP11P51784 963 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 STX17P56962 302 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 IGBP1P78318 339 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 ADAM17P78536 824 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 TCTN1Q2MV58 587 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 NIPA1Q7RTP0 329 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 TRMT1LQ7Z2T5 733 aaKnown RBP13.23□□□□□ -0.29
CLIP1-208ENST00000537004 RPUSD2Q8IZ73 545 aaKnown RBP13.23□□□□□ -0.29
CLIP1-208ENST00000537004 AFAP1L1Q8TED9 768 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 HAS1Q92839 578 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 ERAP1Q9NZ08 941 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 CTNND2Q9UQB3 1225 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 TRIP12Q14669 1992 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-208ENST00000537004 SCN5AQ14524 2016 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 MSH4O15457 936 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 CTSHP09668 335 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 KCNB1Q14721 858 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 MCTP2Q6DN12 878 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 RUFY4Q6ZNE9 571 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 TRAPPC12Q8WVT3 735 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 TTYH1Q9H313 450 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-208ENST00000537004 SMARCAD1Q9H4L7 1026 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 INTS13Q9NVM9 706 aa13.23□□□□□ -0.29
CLIP1-208ENST00000537004 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 KLRC4O43908 158 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 LGR5O75473 907 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 TPM2P07951 284 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 DNAJB2P25686 324 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 STAT5BP51692 787 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 RABGGTBP53611 331 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 SMAD3P84022 425 aaKnown RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 PPFIA1Q13136 1202 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 GRB10Q13322 594 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 KMT5BQ4FZB7 885 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 MARCH8Q5T0T0 291 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 GPR153Q6NV75 609 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 ABHD15Q6UXT9 468 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 VSTM4Q8IW00 320 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CCDC60Q8IWA6 550 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CCDC150Q8NCX0 1101 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 PBX4Q9BYU1 374 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 AZI2Q9H6S1 392 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 MTMR10Q9NXD2 777 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 GDAQ9Y2T3 454 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 EMSYQ7Z589 1322 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 BACH1O14867 736 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 MARCH6O60337 910 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 ATG7O95352 703 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 SKILP12757 684 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 INSRRP14616 1297 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 MYOGP15173 224 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CCZ1BP86790 482 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CCZ1P86791 482 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 SETQ01105 290 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 RBL2Q08999 1139 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 PAK1Q13153 545 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 DHX8Q14562 1220 aaKnown RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 GRIK4Q16099 956 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CDKAL1Q5VV42 579 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 SWSAP1Q6NVH7 229 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 ARMCX5Q6P1M9 558 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 TMCO2Q7Z6W1 182 aaPredicted RBP13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CCDC155Q8N6L0 562 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 CDK5RAP3Q96JB5 506 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 TRIM9Q9C026 710 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms