RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SYCP3Q8IZU3 236 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 LMBR1Q8WVP7 490 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 CASKIN2Q8WXE0 1202 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 KCND2Q9NZV8 630 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 DNAJC12Q9UKB3 198 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 NENFQ9UMX5 172 aa14.33□□□□□ -0.12
LDLR-203ENST00000535915 F8VZ95 297 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 TRIM49P0CI25 452 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 TRIM49CP0CI26 452 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 GUCY2FP51841 1108 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 PLS1Q14651 629 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 CBWD6Q4V339 395 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 CBWD3Q5JTY5 395 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 CBWD5Q5RIA9 395 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 DAAM2Q86T65 1068 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 CDAN1Q8IWY9 1227 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 ZIM3Q96PE6 472 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 PKD2L1Q9P0L9 805 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 DRAP1Q14919 205 aaPredicted RBP14.32□□□□□ -0.12
LDLR-203ENST00000535915 RDH13Q8NBN7 331 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 CCDC43Q96MW1 224 aaKnown RBP14.32□□□□□ -0.12
LDLR-203ENST00000535915 STK33Q9BYT3 514 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 GLIS2Q9BZE0 524 aaPredicted RBP14.32□□□□□ -0.12
LDLR-203ENST00000535915 TMEM39BQ9GZU3 492 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 TMEM59LQ9UK28 342 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 FEM1BQ9UK73 627 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 INTUQ9ULD6 942 aa14.32□□□□□ -0.12
LDLR-203ENST00000535915 ZBTB12Q9Y330 459 aaPredicted RBP14.32□□□□□ -0.12
LDLR-203ENST00000535915 A0A0A6YYK5 440 aaPredicted RBP14.31□□□□□ -0.12
LDLR-203ENST00000535915 EXOC3O60645 756 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 HIP1RO75146 1068 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 GALCP54803 685 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 CFAP58Q5T655 872 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 MAEAQ7L5Y9 396 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 GLYCTKQ8IVS8 523 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 METTL13Q8N6R0 699 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 LNX1Q8TBB1 728 aaPredicted RBP14.31□□□□□ -0.12
LDLR-203ENST00000535915 ACTRT1Q8TDG2 376 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 MXRA8Q9BRK3 442 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 DMAC2Q9NW81 257 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 ATP8B3O60423 1300 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 PGRMC1O00264 195 aaKnown RBP14.31□□□□□ -0.12
LDLR-203ENST00000535915 GUCY2CP25092 1073 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 MYL7Q01449 175 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 TRADDQ15628 312 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 SPDYE2Q495Y8 402 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 SYCE1Q8N0S2 351 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 AP1M1Q9BXS5 423 aa14.31□□□□□ -0.12
LDLR-203ENST00000535915 PLA2G6O60733 806 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 LMNB1P20700 586 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 CAP2P40123 477 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 PPP2R5AQ15172 486 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 B3GNT9Q6UX72 402 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 MIER3Q7Z3K6 550 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 ARL8AQ96BM9 186 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 AGBL1Q96MI9 1066 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 INTS2Q9H0H0 1204 aaKnown RBP14.3□□□□□ -0.12
LDLR-203ENST00000535915 APEX2Q9UBZ4 518 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 CCPG1Q9ULG6 757 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 NOC2LQ9Y3T9 749 aaKnown RBP14.3□□□□□ -0.12
LDLR-203ENST00000535915 K7ENM7 598 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 SHOX2O60902 331 aaPredicted RBP14.3□□□□□ -0.12
LDLR-203ENST00000535915 KRT14P02533 472 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 BFSP1Q12934 665 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 ARHGAP44Q17R89 818 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 TTMPQ5BVD1 217 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 PADI6Q6TGC4 694 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 SLFN11Q7Z7L1 901 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 C10orf67Q8IYJ2 551 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 LARGE2Q8N3Y3 721 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 SLC30A5Q8TAD4 765 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 WHAMMQ8TF30 809 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 SCFD2Q8WU76 684 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 RIT2Q99578 217 aa14.3□□□□□ -0.12
LDLR-203ENST00000535915 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.3□□□□□ -0.125e-8■□□□□ 11.1
LDLR-203ENST00000535915 SUCLA2Q9P2R7 463 aaPredicted RBP14.3□□□□□ -0.12
LDLR-203ENST00000535915 ITGB5P18084 799 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 HLTFQ14527 1009 aaKnown RBP eCLIP14.29□□□□□ -0.12
LDLR-203ENST00000535915 DNAJC21Q5F1R6 531 aaKnown RBP14.29□□□□□ -0.12
LDLR-203ENST00000535915 DAW1Q8N136 415 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 HOOK2Q96ED9 719 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 CAPS2Q9BXY5 557 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 SEPT11Q9NVA2 429 aaKnown RBP14.29□□□□□ -0.12
LDLR-203ENST00000535915 LCMT1Q9UIC8 334 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 FAM170AA1A519 330 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 PPFIA4O75335 1185 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 CCDC172P0C7W6 258 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 ABCB4P21439 1286 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 NPEPPSP55786 919 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 MAPK7Q13164 816 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 TNIP1Q15025 636 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 SKIDA1Q1XH10 827 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 GRIPAP1Q4V328 841 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 SRLQ86TD4 932 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 NT5DC3Q86UY8 548 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 IQCKQ8N0W5 287 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 NEK9Q8TD19 979 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 CALR3Q96L12 384 aaKnown RBP14.29□□□□□ -0.12
LDLR-203ENST00000535915 GMLQ99445 158 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 GPR88Q9GZN0 384 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms