RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 HERC6Q8IVU3 1022 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 TCP11Q8WWU5 503 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 PRPF31Q8WWY3 499 aaKnown RBP25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 NLRP7Q8WX94 980 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 PSPC1Q8WXF1 523 aaKnown RBP25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 LINC01599Q8WXQ3 324 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 TMX1Q9H3N1 280 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 ATP6V0A4Q9HBG4 840 aa25.31■■□□□ 1.64
SFSWAP-204ENST00000535399 SZT2Q5T011 3432 aa25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 USO1O60763 962 aaKnown RBP25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 DARSP14868 501 aaKnown RBP25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 DNAJB2P25686 324 aa25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 MARCKSP29966 332 aaPredicted RBP25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 NASPP49321 788 aaPredicted RBP25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 TMCO2Q7Z6W1 182 aaPredicted RBP25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 ZNF410Q86VK4 478 aa25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 PNMA5Q96PV4 448 aa25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 FBXO2Q9UK22 296 aaPredicted RBP25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 ST3GAL5Q9UNP4 418 aa25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 COL4A3BPQ9Y5P4 624 aa25.3■■□□□ 1.64
SFSWAP-204ENST00000535399 A0A087WZ62 844 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 ARHGEF35A5YM69 484 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 ENPP3O14638 875 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 GPR182O15218 404 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 AMHP03971 560 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 LONP1P36776 959 aaKnown RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 LAMTOR4Q0VGL1 99 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 NFX1Q12986 1120 aaKnown RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 SLC39A14Q15043 492 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 KCNK18Q7Z418 384 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 RTN4RL1Q86UN2 441 aaPredicted RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 SCLT1Q96NL6 688 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 FDXACB1Q9BRP7 624 aaPredicted RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 FTHL17Q9BXU8 183 aa25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 GCOM2Q9BZD3 368 aaPredicted RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 YBX2Q9Y2T7 364 aaKnown RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 SRPRBQ9Y5M8 271 aaKnown RBP25.29■■□□□ 1.64
SFSWAP-204ENST00000535399 BRD1O95696 1058 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 ARL2P36404 184 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 GRB10Q13322 594 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 RAB30Q15771 203 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 ODR4Q5SWX8 454 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 PADI6Q6TGC4 694 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 CABP7Q86V35 215 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 MYOCDQ8IZQ8 938 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 NLRP4Q96MN2 994 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 ZNF396Q96N95 335 aaPredicted RBP25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 BHMT2Q9H2M3 363 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 TFIP11Q9UBB9 837 aaKnown RBP25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 DNM3Q9UQ16 869 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 ZDHHC9Q9Y397 364 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 PCDHA11Q9Y5I1 949 aa25.28■■□□□ 1.64
SFSWAP-204ENST00000535399 E9PMD0 336 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 ASAP2O43150 1006 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 SLC26A4O43511 780 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 MGEA5O60502 916 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 EYA4O95677 639 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 MYOGP15173 224 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 CYP11B2P19099 503 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 ZRSR1Q15695 479 aaKnown RBP25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 TMEM119Q4V9L6 283 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 FAM43BQ6ZT52 329 aaPredicted RBP25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 LINC00301Q8NCQ3 95 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 ASAP3Q8TDY4 903 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 TIFAQ96CG3 184 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 CSRNP2Q9H175 543 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 TSPYL2Q9H2G4 693 aaPredicted RBP25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 IFT122Q9HBG6 1241 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 MSRAQ9UJ68 235 aa25.27■■□□□ 1.64
SFSWAP-204ENST00000535399 CSDE1O75534 798 aaKnown RBP25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 GJB5O95377 273 aa25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 KCTD17Q8N5Z5 321 aa25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 MCPH1Q8NEM0 835 aa25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 TOP1MTQ969P6 601 aa25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 POLR3FQ9H1D9 316 aaPredicted RBP25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 GPRC5CQ9NQ84 441 aa25.26■■□□□ 1.63
SFSWAP-204ENST00000535399 SRGAP2CP0DJJ0 459 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 FGFR4P22455 802 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 GLRA2P23416 452 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 UBA7P41226 1012 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 DSC3Q14574 896 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 MXD4Q14582 209 aaPredicted RBP25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 FOXD4L6Q3SYB3 417 aaPredicted RBP25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 FOXD4L3Q6VB84 417 aaPredicted RBP25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 MAEAQ7L5Y9 396 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 CLIC6Q96NY7 704 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 PLIN2Q99541 437 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 NT5C3AQ9H0P0 336 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 NKX2-4Q9H2Z4 354 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 ARID2Q68CP9 1835 aa25.25■■□□□ 1.63
SFSWAP-204ENST00000535399 MICAL3Q7RTP6 2002 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 YEATS4O95619 227 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 STK38Q15208 465 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 SPECC1Q5M775 1068 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 FAM117BQ6P1L5 589 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 USP49Q70CQ1 688 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 Q7L0L9 218 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 RNF149Q8NC42 400 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 CCSER1Q9C0I3 900 aa25.24■■□□□ 1.63
SFSWAP-204ENST00000535399 TTYH1Q9H313 450 aaPredicted RBP25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms