RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TOPORSQ9NS56 1045 aaPredicted RBP5.25□□□□□ -1.57
CD44-233ENST00000531141 SLC5A4Q9NY91 659 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 WASHC2AQ641Q2 1341 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 A0A0A6YYJ9 748 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 LCHNA4D1U4 455 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 PFKMP08237 780 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 BMP7P18075 431 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 SESN2P58004 480 aaPredicted RBP5.24□□□□□ -1.57
CD44-233ENST00000531141 ERVK-21P61565 698 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 FSCN1Q16658 493 aaKnown RBP5.24□□□□□ -1.57
CD44-233ENST00000531141 ZMAT1Q5H9K5 638 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 SPOCD1Q6ZMY3 1216 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 LGI4Q8N135 537 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 CDYL2Q8N8U2 506 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 SYT8Q8NBV8 401 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 RSAD2Q8WXG1 361 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 DYDC2Q96IM9 177 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 HIST1H2AHQ96KK5 128 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 HIST1H2AJQ99878 128 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 ZCCHC4Q9H5U6 513 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 SAE1Q9UBE0 346 aaPredicted RBP5.24□□□□□ -1.57
CD44-233ENST00000531141 KCNG1Q9UIX4 513 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 VWA7Q9Y334 891 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 PCDHB6Q9Y5E3 794 aa5.24□□□□□ -1.57
CD44-233ENST00000531141 ENPP1P22413 925 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 GPR15P49685 360 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 MEOX1P50221 254 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 GUCY2FP51841 1108 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 IGBP1P78318 339 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 PDCD1Q15116 288 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 CCDC178Q5BJE1 867 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 CCDC62Q6P9F0 684 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 UNQ6494/PRO21346Q6UXR6 183 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 GPR155Q7Z3F1 870 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 FRMD5Q7Z6J6 570 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 KBTBD2Q8IY47 623 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 RPUSD2Q8IZ73 545 aaKnown RBP5.23□□□□□ -1.57
CD44-233ENST00000531141 RTKN2Q8IZC4 609 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 BCL6BQ8N143 479 aaPredicted RBP5.23□□□□□ -1.57
CD44-233ENST00000531141 CNTD1Q8N815 330 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 MTMR8Q96EF0 704 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 KRTAP4-5Q9BYR2 181 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 TYW1Q9NV66 732 aaKnown RBP5.23□□□□□ -1.57
CD44-233ENST00000531141 C14orf119Q9NWQ9 140 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 CDC42EP3Q9UKI2 254 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 SYNPO2Q9UMS6 1093 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 NUMBLQ9Y6R0 609 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 MYPNQ86TC9 1320 aa5.23□□□□□ -1.57
CD44-233ENST00000531141 PRSS38A1L453 326 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 NRP2O60462 931 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 B4GALT3O60512 393 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 PCDH8O95206 1070 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 ZNF888P0CJ79 500 aaPredicted RBP5.22□□□□□ -1.57
CD44-233ENST00000531141 STAT5BP51692 787 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 PPARAQ07869 468 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 PCOLCEQ15113 449 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 SURF1Q15526 300 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.22□□□□□ -1.57
CD44-233ENST00000531141 AGBL4Q5VU57 503 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 TRIM68Q6AZZ1 485 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 KLHDC10Q6PID8 442 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 FEZF2Q8TBJ5 459 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 LMBR1Q8WVP7 490 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 LPPQ93052 612 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 NOL10Q9BSC4 688 aaKnown RBP5.22□□□□□ -1.57
CD44-233ENST00000531141 KIAA1683Q9H0B3 1180 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 XYLT2Q9H1B5 865 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 OR10A2Q9H208 303 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 VTA1Q9NP79 307 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 PARD6AQ9NPB6 346 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 HOMER2Q9NSB8 354 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 SLC4A7Q9Y6M7 1214 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 ADAMTS20P59510 1910 aa5.22□□□□□ -1.57
CD44-233ENST00000531141 CLEC2LP0C7M8 214 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 MRE11P49959 708 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 RRADP55042 308 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 KLF1Q13351 362 aaPredicted RBP5.21□□□□□ -1.58
CD44-233ENST00000531141 SPIDRQ14159 915 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 FAM50AQ14320 339 aaKnown RBP5.21□□□□□ -1.58
CD44-233ENST00000531141 UGT8Q16880 541 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 PITRM1Q5JRX3 1037 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 SYDE2Q5VT97 1194 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 LARP4Q71RC2 724 aaKnown RBP eCLIP5.21□□□□□ -1.58
CD44-233ENST00000531141 OR14C36Q8NHC7 312 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 NKD2Q969F2 451 aaPredicted RBP5.21□□□□□ -1.58
CD44-233ENST00000531141 GFM2Q969S9 779 aaKnown RBP5.21□□□□□ -1.58
CD44-233ENST00000531141 RAX2Q96IS3 184 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 WDR92Q96MX6 357 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 TEPSINQ96N21 525 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 ORAI2Q96SN7 254 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 ANO3Q9BYT9 981 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 KCTD10Q9H3F6 313 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 MSL2Q9HCI7 577 aa5.21□□□□□ -1.58
CD44-233ENST00000531141 CCM2LQ9NUG4 571 aaPredicted RBP5.21□□□□□ -1.58
CD44-233ENST00000531141 OTOL1A6NHN0 477 aaPredicted RBP5.2□□□□□ -1.58
CD44-233ENST00000531141 GOLGA8AA7E2F4 631 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 GOLGA8BA8MQT2 603 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 H2AFYO75367 372 aaKnown RBP5.2□□□□□ -1.58
CD44-233ENST00000531141 KATNA1O75449 491 aa5.2□□□□□ -1.58
CD44-233ENST00000531141 SEC24DO94855 1032 aaPredicted RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms