RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 LRRC10BA6NIK2 292 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 GOLGA6L6A8MZA4 724 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 HOXD8P13378 290 aaPredicted RBP23.16■■□□□ 1.3
VPS28-208ENST00000527797 HOXD10P28358 340 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 HOXD13P35453 343 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 SOX10P56693 466 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 KRT31Q15323 416 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 DGKDQ16760 1214 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 SPC24Q8NBT2 197 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 SPIRE2Q8WWL2 714 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 TRIM44Q96DX7 344 aaPredicted RBP23.16■■□□□ 1.3
VPS28-208ENST00000527797 IFT74Q96LB3 600 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 POLR3FQ9H1D9 316 aaPredicted RBP23.16■■□□□ 1.3
VPS28-208ENST00000527797 Q9Y3F1 56 aa23.16■■□□□ 1.3
VPS28-208ENST00000527797 DOCK3Q8IZD9 2030 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 CCDC169A6NNP5 214 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 MAFO75444 373 aaPredicted RBP23.15■■□□□ 1.3
VPS28-208ENST00000527797 PPP1R37O75864 691 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 NCKAP1LP55160 1127 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 TBC1D8BQ0IIM8 1120 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 APTXQ7Z2E3 356 aaKnown RBP23.15■■□□□ 1.3
VPS28-208ENST00000527797 HAUS6Q7Z4H7 955 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 TLK2Q86UE8 772 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 TRIB2Q92519 343 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 CEP63Q96MT8 703 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 ZNF215Q9UL58 517 aaPredicted RBP23.15■■□□□ 1.3
VPS28-208ENST00000527797 WDR81Q562E7 1941 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 A0A1B0GTH6 734 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 SLC16A4O15374 487 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 NPTX2P47972 431 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 KCNA1Q09470 495 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 LRRC55Q6ZSA7 311 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 EEF2KMTQ96G04 330 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 NTPCRQ9BSD7 190 aaKnown RBP23.15■■□□□ 1.3
VPS28-208ENST00000527797 C16orf70Q9BSU1 422 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 RNPEPQ9H4A4 650 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 KMT5AQ9NQR1 393 aa23.15■■□□□ 1.3
VPS28-208ENST00000527797 MGAMO43451 1857 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 A6NJR5 290 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 GPR25O00155 361 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 AKR1A1P14550 325 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 GTF2BQ00403 316 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 KSR1Q8IVT5 923 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 BSNDQ8WZ55 320 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 TMEM143Q96AN5 459 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 CNOT6LQ96LI5 555 aaKnown RBP23.14■■□□□ 1.29
VPS28-208ENST00000527797 ACCSQ96QU6 501 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 JPH2Q9BR39 696 aaPredicted RBP23.14■■□□□ 1.29
VPS28-208ENST00000527797 AP5M1Q9H0R1 490 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 TMEM206Q9H813 350 aa23.14■■□□□ 1.29
VPS28-208ENST00000527797 MYH9P35579 1960 aaKnown RBP23.14■■□□□ 1.29
VPS28-208ENST00000527797 GAS2O43903 313 aaKnown RBP23.13■■□□□ 1.29
VPS28-208ENST00000527797 TPM2P07951 284 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 ZNF286BP0CG31 522 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 ARL2P36404 184 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 COPB1P53618 953 aaKnown RBP23.13■■□□□ 1.29
VPS28-208ENST00000527797 CAP1Q01518 475 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 ADAM9Q13443 819 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 NR1I3Q14994 352 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 ZNF484Q5JVG2 852 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 FILIP1Q7Z7B0 1213 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 SYCP3Q8IZU3 236 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 CD99L2Q8TCZ2 262 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 TAB2Q9NYJ8 693 aa23.13■■□□□ 1.29
VPS28-208ENST00000527797 ZBTB42B2RXF5 422 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 H0YCG3 227 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 H3BRB1 525 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 N4BP3O15049 544 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 CETN3O15182 167 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 TGFB1I1O43294 461 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 CYBAP13498 195 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 RPL13P26373 211 aaKnown RBP23.12■■□□□ 1.29
VPS28-208ENST00000527797 PPP2R5AQ15172 486 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 BRDTQ58F21 947 aaPredicted RBP23.12■■□□□ 1.29
VPS28-208ENST00000527797 HS2ST1Q7LGA3 356 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 ZC3H3Q8IXZ2 948 aaKnown RBP23.12■■□□□ 1.29
VPS28-208ENST00000527797 TCP11Q8WWU5 503 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 HVCN1Q96D96 273 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 GBP3Q9H0R5 595 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 TUT1Q9H6E5 874 aaKnown RBP23.12■■□□□ 1.29
VPS28-208ENST00000527797 RTN4Q9NQC3 1192 aaKnown RBP23.12■■□□□ 1.29
VPS28-208ENST00000527797 INTS13Q9NVM9 706 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 SRRDQ9UH36 339 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 ARID2Q68CP9 1835 aa23.12■■□□□ 1.29
VPS28-208ENST00000527797 GNA14O95837 355 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 MTIF2P46199 727 aaKnown RBP23.11■■□□□ 1.29
VPS28-208ENST00000527797 IER5Q5VY09 327 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 TMEM161BQ8NDZ6 487 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 TRPV1Q8NER1 839 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 GOLGA5Q8TBA6 731 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 LENG1Q96BZ8 264 aaPredicted RBP23.11■■□□□ 1.29
VPS28-208ENST00000527797 TUBGCP2Q9BSJ2 902 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 VPS16Q9H269 839 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 SAGE1Q9NXZ1 904 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 ZMYM2Q9UBW7 1377 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 IGKV6-21A0A0C4DH24 114 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 GNRH1P01148 92 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 INSRRP14616 1297 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 NR2F2P24468 414 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 ABCD1P33897 745 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms