RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 SGPP1Q9BX95 441 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 CABP5Q9NP86 173 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 DTLQ9NZJ0 730 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 ATP23Q9Y6H3 246 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 ABCA3Q99758 1704 aa9.16□□□□□ -0.94
SDCBP-208ENST00000520228 MAP3K19Q56UN5 1328 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 WDR17Q8IZU2 1322 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 SLC12A8A0AV02 714 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 FAM90A27PA6NNH2 459 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 ACOT7O00154 380 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 N4BP3O15049 544 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 KRT1P04264 644 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 NCAM1P13591 858 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 ATF2P15336 505 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 POU3F3P20264 500 aaPredicted RBP9.15□□□□□ -0.94
SDCBP-208ENST00000520228 EPHB3P54753 998 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 DLG4P78352 724 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 SEC23AQ15436 765 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 CR1LQ2VPA4 569 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 SKOR2Q2VWA4 1001 aaPredicted RBP9.15□□□□□ -0.94
SDCBP-208ENST00000520228 CREB3L3Q68CJ9 461 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 ETV3LQ6ZN32 361 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 KRT27Q7Z3Y8 459 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 IP6K1Q92551 441 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 DLG3Q92796 817 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 BOCQ9BWV1 1114 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 THRAP3Q9Y2W1 955 aaKnown RBP9.15□□□□□ -0.94
SDCBP-208ENST00000520228 KNSTRNQ9Y448 316 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 RNF114Q9Y508 228 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 B3GALT1Q9Y5Z6 326 aa9.15□□□□□ -0.94
SDCBP-208ENST00000520228 PHRF1Q9P1Y6 1649 aaKnown RBP9.15□□□□□ -0.94
SDCBP-208ENST00000520228 NFAT5O94916 1531 aa9.15□□□□□ -0.95
SDCBP-208ENST00000520228 COL5A2P05997 1499 aaPredicted RBP9.15□□□□□ -0.95
SDCBP-208ENST00000520228 AKAP12Q02952 1782 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 PTPDC1A2A3K4 754 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 LRG1P02750 347 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 PTPN1P18031 435 aaKnown RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 SOX5P35711 763 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 NCKAP1LP55160 1127 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 GRIN1Q05586 938 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 CACNB2Q08289 660 aaPredicted RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 RRS1Q15050 365 aaKnown RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 DHCR24Q15392 516 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 TARBP2Q15633 366 aaKnown RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 AFAP1L2Q8N4X5 818 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 UBR7Q8N806 425 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 LEO1Q8WVC0 666 aaPredicted RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 LTV1Q96GA3 475 aaPredicted RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 TOE1Q96GM8 510 aaKnown RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 GLI3P10071 1580 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 MON2Q7Z3U7 1717 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 MARF1Q9Y4F3 1742 aaKnown RBP9.14□□□□□ -0.95
SDCBP-208ENST00000520228 CRYBG1Q9Y4K1 1723 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 CRB1P82279 1406 aa9.14□□□□□ -0.95
SDCBP-208ENST00000520228 WASHC2AQ641Q2 1341 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 ANKRD62A6NC57 917 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 ZNF891A8MT65 544 aaPredicted RBP9.13□□□□□ -0.95
SDCBP-208ENST00000520228 DVL2O14641 736 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 MED14OSP0DP75 135 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 FAHP16930 419 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 GLDCP23378 1020 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 HOXC9P31274 260 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 GJA4P35212 333 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 PAN2Q504Q3 1202 aaKnown RBP9.13□□□□□ -0.95
SDCBP-208ENST00000520228 TEPPQ6URK8 271 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 STRA8Q7Z7C7 330 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 NXPE1Q8N323 547 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 KCNN1Q92952 543 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 FAM84AQ96KN4 292 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 NWD2Q9ULI1 1742 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 PLCH1Q4KWH8 1693 aa9.13□□□□□ -0.95
SDCBP-208ENST00000520228 CCDC7Q96M83 1385 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 ETV2O00321 342 aaPredicted RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 PPM1GO15355 546 aaPredicted RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 PAX4O43316 350 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 FARP2O94887 1054 aaPredicted RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 C4BPAP04003 597 aaKnown RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 C8BP07358 591 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 ATP2A2P16615 1042 aaKnown RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 MC3RP41968 323 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 TNNT2P45379 298 aaPredicted RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 IRF9Q00978 393 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 BTBD8Q5XKL5 378 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 CPZQ66K79 652 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 OGFOD2Q6N063 350 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 DDX46Q7L014 1031 aaKnown RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 B3GNT8Q7Z7M8 397 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 FAM26EQ8N5C1 309 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 POU5F2Q8N7G0 328 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 SMC1BQ8NDV3 1235 aa9.12□□□□□ -0.95
SDCBP-208ENST00000520228 FAM126AQ9BYI3 521 aaPredicted RBP9.12□□□□□ -0.95
SDCBP-208ENST00000520228 SCDO00767 359 aa9.11□□□□□ -0.95
SDCBP-208ENST00000520228 BUB1BO60566 1050 aaPredicted RBP9.11□□□□□ -0.95
SDCBP-208ENST00000520228 BPIP17213 487 aa9.11□□□□□ -0.95
SDCBP-208ENST00000520228 PFKLP17858 780 aa9.11□□□□□ -0.95
SDCBP-208ENST00000520228 ZEB1P37275 1124 aaPredicted RBP9.11□□□□□ -0.95
SDCBP-208ENST00000520228 STAT5AP42229 794 aa9.11□□□□□ -0.95
SDCBP-208ENST00000520228 SYDE1Q6ZW31 735 aaPredicted RBP9.11□□□□□ -0.95
SDCBP-208ENST00000520228 MORC1Q86VD1 984 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms