RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 SLC17A8Q8NDX2 589 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 TRAPPC12Q8WVT3 735 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 PSPC1Q8WXF1 523 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 ZBTB10Q96DT7 871 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 DRC1Q96MC2 740 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 MTRQ99707 1265 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 GDF15Q99988 308 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 INO80BQ9C086 356 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 CCSER1Q9C0I3 900 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 WNT8AQ9H1J5 351 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 HOOK1Q9UJC3 728 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 FBXO2Q9UK22 296 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 CLIC4Q9Y696 253 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 SCN5AQ14524 2016 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 LAMA3Q16787 3333 aa8.62□□□□□ -1.03
LIMCH1-222ENST00000515847 RBAK-RBAKDNI3L0D1 243 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 SLITRK3O94933 977 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 C22orf31O95567 290 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 EYA4O95677 639 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 KRT18P05783 430 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 SELPP16109 830 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 MARCKSP29966 332 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 THPOP40225 353 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 STAT6P42226 847 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 RARRES1P49788 294 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 FPGSQ05932 587 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 NCBP1Q09161 790 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 PKP1Q13835 747 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 EMC2Q15006 297 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 TRIM71Q2Q1W2 868 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 RRAGBQ5VZM2 374 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 MFSD5Q6N075 450 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 MTHFD1LQ6UB35 978 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 RUFY4Q6ZNE9 571 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 LRRC8DQ7L1W4 858 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 APBB1IPQ7Z5R6 666 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 ZNF410Q86VK4 478 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 CATSPER3Q86XQ3 398 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 CEP57L1Q8IYX8 460 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 METTL13Q8N6R0 699 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 IQUBQ8NA54 791 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 KIFAP3Q92845 792 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 APBB2Q92870 758 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 CCDC47Q96A33 483 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 SCLYQ96I15 445 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 IFT74Q96LB3 600 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 UBE2OQ9C0C9 1292 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 PRO3102Q9H379 93 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 C17orf75Q9HAS0 396 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 DDX19AQ9NUU7 478 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 RGL1Q9NZL6 768 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 KIAA1024Q9UPX6 916 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 AKT3Q9Y243 479 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 SQORQ9Y6N5 450 aa8.61□□□□□ -1.03
LIMCH1-222ENST00000515847 SIP14410 1827 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 A0A1W2PQ27 194 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 A0A1W2PQ64 194 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 A0A1W2PQD8 194 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 TMEM150BA6NC51 233 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 ZBTB42B2RXF5 422 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 ARHGAP33O14559 1287 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 TBCAO75347 108 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 MED24O75448 989 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 SSBP05455 408 aaKnown RBP eCLIP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 MYL1P05976 194 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 CTSHP09668 335 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 CKBP12277 381 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 CSF2RAP15509 400 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 PTMSP20962 102 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 SFPQP23246 707 aaKnown RBP eCLIP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 KLRC1P26715 233 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 PHKA2P46019 1235 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 EPHB4P54760 987 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 MRPS6P82932 125 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 FOXD4L6Q3SYB3 417 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 TMEM119Q4V9L6 283 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 MARCH8Q5T0T0 291 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 ADALQ6DHV7 355 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 FAM173BQ6P4H8 233 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 TRAF7Q6Q0C0 670 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 FOXD4L3Q6VB84 417 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 ZBTB8OSQ8IWT0 167 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 LEO1Q8WVC0 666 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 MRPS27Q92552 414 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 LARP4BQ92615 738 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 SYMPKQ92797 1274 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 FAM49AQ9H0Q0 323 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 CSRNP2Q9H175 543 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 C2orf40Q9H1Z8 148 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 BHMT2Q9H2M3 363 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 TNMDQ9H2S6 317 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 DHX33Q9H6R0 707 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 WRAP73Q9P2S5 460 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 RCOR1Q9UKL0 485 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 ODF2LQ9ULJ1 636 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 TRPV2Q9Y5S1 764 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 MYH15Q9Y2K3 1946 aa8.6□□□□□ -1.03
LIMCH1-222ENST00000515847 ARID2Q68CP9 1835 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 RSPH10B2B2RC85 870 aa8.59□□□□□ -1.03
LIMCH1-222ENST00000515847 USO1O60763 962 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms