RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TSPY4P0CV99 314 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 TSPY10P0CW01 314 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 COL6A1P12109 1028 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 AOAHP28039 575 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 IL13P35225 146 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 NEK4P51957 841 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 PFKPQ01813 784 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 PHF19Q5T6S3 580 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 GGT6Q6P531 493 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 TRMT10BQ6PF06 316 aaKnown RBP5.24□□□□□ -1.57
NUP54-212ENST00000513248 BORAQ6PGQ7 559 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 RTN4RL1Q86UN2 441 aaPredicted RBP5.24□□□□□ -1.57
NUP54-212ENST00000513248 FAM124AQ86V42 546 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 CHAC2Q8WUX2 184 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 YTHDC1Q96MU7 727 aaKnown RBP5.24□□□□□ -1.57
NUP54-212ENST00000513248 SSBP3Q9BWW4 388 aaPredicted RBP5.24□□□□□ -1.57
NUP54-212ENST00000513248 SPC25Q9HBM1 224 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 IFT57Q9NWB7 429 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 OXSMQ9NWU1 459 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 ARHGAP20Q9P2F6 1191 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 ZFP69BQ9UJL9 534 aa5.24□□□□□ -1.57
NUP54-212ENST00000513248 ZNF644Q9H582 1327 aaPredicted RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 PREX2Q70Z35 1606 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 MADDQ8WXG6 1647 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 LRRIQ1Q96JM4 1722 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 MROH6A6NGR9 719 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 C9orf118A6NHY6 69 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 SCDO00767 359 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 FBXO21O94952 628 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 IL18BPO95998 194 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 CYP1A1P04798 512 aaPredicted RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 ADCYAP1R1P41586 468 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 GLRBP48167 497 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 LSSP48449 732 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 FNTBP49356 437 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 HSPA2P54652 639 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 SMAD3P84022 425 aaKnown RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 AMPD3Q01432 767 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 SMAD2Q15796 467 aaKnown RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 EFHBQ8N7U6 833 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 CHTF18Q8WVB6 975 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 LEO1Q8WVC0 666 aaPredicted RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 ASB15Q8WXK1 588 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 LCORQ96JN0 433 aaPredicted RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 ELF4Q99607 663 aaPredicted RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 BRINP2Q9C0B6 783 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 H2AFY2Q9P0M6 372 aaPredicted RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 FTSJ1Q9UET6 329 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 RIMS1Q86UR5 1692 aaKnown RBP5.23□□□□□ -1.57
NUP54-212ENST00000513248 BCORL1Q5H9F3 1711 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 ABCC1P33527 1531 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 SYCP2Q9BX26 1530 aa5.23□□□□□ -1.57
NUP54-212ENST00000513248 MLH3Q9UHC1 1453 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 PRAMEF25A6NGN4 478 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 GOLGA6L22H0YM25 854 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 DNAJC6O75061 913 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 MAFO75444 373 aaPredicted RBP5.22□□□□□ -1.57
NUP54-212ENST00000513248 FSHBP01225 129 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 TACR2P21452 398 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 SOX5P35711 763 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 STILQ15468 1287 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 GPR158Q5T848 1215 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 ESRP1Q6NXG1 681 aaKnown RBP5.22□□□□□ -1.57
NUP54-212ENST00000513248 DDX46Q7L014 1031 aaKnown RBP5.22□□□□□ -1.57
NUP54-212ENST00000513248 CHST13Q8NET6 341 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 OR2W6PQ8NHA6 318 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 IGDCC4Q8TDY8 1250 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 AMNQ9BXJ7 453 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 TMEM168Q9H0V1 697 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 ZMAT4Q9H898 229 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 SLC39A2Q9NP94 309 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 ACSS2Q9NR19 701 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 KCND1Q9NSA2 647 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 ARHGAP28Q9P2N2 729 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 INVSQ9Y283 1065 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 TSC22D4Q9Y3Q8 395 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 ASB1Q9Y576 335 aa5.22□□□□□ -1.57
NUP54-212ENST00000513248 ADAMTSL3P82987 1691 aa5.21□□□□□ -1.57
NUP54-212ENST00000513248 NCOA2Q15596 1464 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 CDC42BPBQ9Y5S2 1711 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 CYR61O00622 381 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 NEMP1O14524 444 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 KIF3BO15066 747 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 FOXP2O15409 715 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 ZEB2O60315 1214 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 CHGBP05060 677 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 CYP17A1P05093 508 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 MMEP08473 750 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 C6P13671 934 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 GDF5P43026 501 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 SCNN1BP51168 640 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 PHC1P78364 1004 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 LRRC32Q14392 662 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 EPHA7Q15375 998 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 SURF1Q15526 300 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 STPG3Q8N7X2 389 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 UBR7Q8N806 425 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 KIAA1958Q8N8K9 716 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 MBD6Q96DN6 1003 aa5.21□□□□□ -1.58
NUP54-212ENST00000513248 GPATCH3Q96I76 525 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms