RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SIK1P57059 783 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 CYP4A11Q02928 519 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 R3HDM1Q15032 1099 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM133AQ8N9E0 248 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PNMA1Q8ND90 353 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 NSMCE1Q8WV22 266 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 POMGNT1Q8WZA1 660 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 NHEJ1Q9H9Q4 299 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 METTL14Q9HCE5 456 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 SUCLA2Q9P2R7 463 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 USP32Q8NFA0 1604 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 CARMIL3Q8ND23 1372 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KDM3AQ9Y4C1 1321 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 TARSL2A2RTX5 802 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 C16orf96A6NNT2 1141 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 NEURL1BA8MQ27 555 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 UBE3AQ05086 875 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 FSCBQ5H9T9 825 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KLC3Q6P597 504 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KRT73Q86Y46 540 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KLHL23Q8NBE8 558 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 MCUQ8NE86 351 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 MASTLQ96GX5 879 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 ZNF496Q96IT1 587 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 FMO2Q99518 471 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 MLXIPQ9HAP2 919 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 EDC4Q6P2E9 1401 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GGCXP38435 758 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 TRIP13Q15645 432 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 ATAD3BQ5T9A4 648 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PLEKHM3Q6ZWE6 761 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 ZNF589Q86UQ0 364 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 NCAPG2Q86XI2 1143 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 CRLF3Q8IUI8 442 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GSPT2Q8IYD1 628 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 EXOC8Q8IYI6 725 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 CCDC24Q8N4L8 307 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 ASZ1Q8WWH4 475 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 CHMP6Q96FZ7 201 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GCNAQ96QF7 691 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM96AQ9H5X1 160 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 C1orf112Q9NSG2 853 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 NR2E3Q9Y5X4 410 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 MAGEA13PA6NCF6 341 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 SGK1O00141 431 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 XPOTO43592 962 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 NSFP46459 744 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 EIF4A1P60842 406 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 KCNA1Q09470 495 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 TCP10Q12799 353 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 NR5A1Q13285 461 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 CUL1Q13616 776 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 SGO2Q562F6 1265 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ZMYND12Q9H0C1 365 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 RNPEPQ9H4A4 650 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 TRPC6Q9Y210 931 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 PCP4L1A6NKN8 68 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 USP27XA6NNY8 438 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 TBKBP1A7MCY6 615 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 KLRF2D3W0D1 207 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 H7C0C1 242 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 STRNO43815 780 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 LRRN2O75325 713 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 PRPF6O94906 941 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 DLGAP3O95886 979 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 NR2F2P24468 414 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 MLH1P40692 756 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ATP5OP48047 213 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 AKR1D1P51857 326 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 KBTBD12Q3ZCT8 623 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 C1orf228Q6PIY5 440 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 APOBEC3FQ8IUX4 373 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 MFN1Q8IWA4 741 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 P2RX5Q93086 422 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ARHGAP31Q2M1Z3 1444 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ZNF839A8K0R7 811 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 TOM1L1O75674 476 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ACADSP16219 412 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 KPNB1Q14974 876 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 DEPDC1Q5TB30 811 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 APOA5Q6Q788 366 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 TOGARAM2Q6ZUX3 1019 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM47EQ6ZV65 393 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 NLRP9Q7RTR0 991 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 RASGRP4Q8TDF6 673 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 C17orf50Q8WW18 174 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 TMEM245Q9H330 911 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 OSBPL3Q9H4L5 887 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ATP8A2Q9NTI2 1148 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ZFATQ9P243 1243 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 STAP2Q9UGK3 403 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 MID2Q9UJV3 735 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ANAPC5Q9UJX4 755 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 APOBEC2Q9Y235 224 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 PLAAQ9Y263 795 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 BZW2Q9Y6E2 419 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ECEL1O95672 775 aa9.3□□□□□ -0.92
LIMCH1-218ENST00000513024 ZBED6P86452 979 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms