RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TRAPPC3O43617 180 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 CAND2O75155 1236 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 SHBGP04278 402 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 SOX5P35711 763 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 JAM2P57087 298 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 APOBEC3HQ6NTF7 200 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.05□□□□□ -0.82e-6■■■■■ 44.5
LIMCH1-215ENST00000512632 OSBPL7Q9BZF2 842 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 SLITRK6Q9H5Y7 841 aa10.05□□□□□ -0.8
LIMCH1-215ENST00000512632 GYS1P13807 737 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 PSMC2P35998 433 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 BIRC3Q13489 604 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 DCAF12L1Q5VU92 463 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 RASGEF1CQ8N431 466 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 C1orf131Q8NDD1 294 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 SIAH1Q8IUQ4 282 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 ALG3Q92685 438 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 TEKT1Q969V4 418 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 DYDC2Q96IM9 177 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 SEC16BQ96JE7 1060 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 MBOAT7Q96N66 472 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 SELENOSQ9BQE4 189 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 GLT8D2Q9H1C3 349 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 DAAM1Q9Y4D1 1078 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 TNRC6CQ9HCJ0 1690 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 MYH7BA7E2Y1 1941 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 DNM1LO00429 736 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 FMO5P49326 533 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 DR1Q01658 176 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 ICA1Q05084 483 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 ACTN3Q08043 901 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 MTMR3Q13615 1198 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 ZNF746Q6NUN9 644 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 CEP89Q96ST8 783 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 MAST2Q6P0Q8 1798 aa10.04□□□□□ -0.8
LIMCH1-215ENST00000512632 PPP1R12BO60237 982 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CFBP00751 764 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 IRX3P78415 501 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 C6orf89Q6UWU4 347 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 FBXO25Q8TCJ0 367 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 RFFLQ8WZ73 363 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC17Q96LX7 622 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM114A2Q9NRY5 505 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 FOXN3O00409 490 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CLSTN1O94985 981 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 EYA4O95677 639 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 SLCO1A2P46721 670 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 SETQ01105 290 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 POU5F1Q01860 360 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 AP3B2Q13367 1082 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 UBAP2Q5T6F2 1119 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CACNA2D3Q8IZS8 1091 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 EIF1ADQ8N9N8 165 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 HOOK2Q96ED9 719 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 STK33Q9BYT3 514 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 COA1Q9GZY4 146 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 DBNDD1Q9H9R9 158 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 NENFQ9UMX5 172 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 MYO3BQ8WXR4 1341 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CTNND1O60716 968 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 NDUFB10O96000 172 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 HS2ST1Q7LGA3 356 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CRYGNQ8WXF5 182 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM20AQ96MK3 541 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 PCIF1Q9H4Z3 704 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 VCPKMTQ9H867 229 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 DDX3YO15523 660 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 LMNB1P20700 586 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 MARCKSL1P49006 195 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM178BQ8IXR5 827 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 SYCP3Q8IZU3 236 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 SLC30A5Q8TAD4 765 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CERKQ8TCT0 537 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 ATP8B4Q8TF62 1192 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 SLC20A1Q8WUM9 679 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 KRT35Q92764 455 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 PSMD1Q99460 953 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 ERP44Q9BS26 406 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC113Q9H0I3 377 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 SLC40A1Q9NP59 571 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 KLC4Q9NSK0 619 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 CTTNBP2NLQ9P2B4 639 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 VAV3Q9UKW4 847 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 COG5Q9UP83 839 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 ALG6Q9Y672 507 aa10.03□□□□□ -0.8
LIMCH1-215ENST00000512632 A0A0A6YYK5 440 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 PPEF1O14829 653 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 EXOC3O60645 756 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 DDR1Q08345 913 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 TBC1D10BQ4KMP7 808 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 ODR4Q5SWX8 454 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 AGBL2Q5U5Z8 902 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 YTHDF3Q7Z739 585 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 BANK1Q8NDB2 785 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 C18orf8Q96DM3 657 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 BORCS6Q96GS4 357 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 PKD2L1Q9P0L9 805 aa10.02□□□□□ -0.8
LIMCH1-215ENST00000512632 TMEM253P0C7T8 217 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 SREBF1P36956 1147 aa10.02□□□□□ -0.81
LIMCH1-215ENST00000512632 CRKP46108 304 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms