RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 CALUO43852 315 aaPredicted RBP12.91□□□□□ -0.34
UBE3D-206ENST00000505226 GCNT3O95395 438 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 RPA1P27694 616 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 ARHGAP4P98171 946 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 PREPLQ4J6C6 727 aaPredicted RBP12.91□□□□□ -0.34
UBE3D-206ENST00000505226 ZC2HC1CQ53FD0 456 aaPredicted RBP12.91□□□□□ -0.34
UBE3D-206ENST00000505226 BARGINQ6ZT62 677 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 CPLX4Q7Z7G2 160 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 THAP2Q9H0W7 228 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 ACTR5Q9H9F9 607 aaPredicted RBP12.91□□□□□ -0.34
UBE3D-206ENST00000505226 RGL1Q9NZL6 768 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 TMOD4Q9NZQ9 345 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 INTUQ9ULD6 942 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 DNM3Q9UQ16 869 aa12.91□□□□□ -0.34
UBE3D-206ENST00000505226 RAD21O60216 631 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 CHN1P15882 459 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 SETQ01105 290 aaPredicted RBP12.9□□□□□ -0.34
UBE3D-206ENST00000505226 DR1Q01658 176 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 DRAP1Q14919 205 aaPredicted RBP12.9□□□□□ -0.34
UBE3D-206ENST00000505226 BMT2Q1RMZ1 405 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 CBWD6Q4V339 395 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 CBWD3Q5JTY5 395 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 CBWD5Q5RIA9 395 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 SYCE1Q8N0S2 351 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 ATXN2LQ8WWM7 1075 aaKnown RBP12.9□□□□□ -0.34
UBE3D-206ENST00000505226 ERP44Q9BS26 406 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 SERPINB13Q9UIV8 391 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 SNX24Q9Y343 169 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 EML1O00423 815 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 MPHOSPH10O00566 681 aaKnown RBP12.9□□□□□ -0.34
UBE3D-206ENST00000505226 NMT1P30419 496 aaKnown RBP12.9□□□□□ -0.34
UBE3D-206ENST00000505226 SOX5P35711 763 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 GTF2IP78347 998 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 IFFO1Q0D2I5 559 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 WLSQ5T9L3 541 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 GKAP1Q5VSY0 366 aaPredicted RBP12.9□□□□□ -0.34
UBE3D-206ENST00000505226 ZFPM1Q8IX07 1006 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 FBXO25Q8TCJ0 367 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 HVCN1Q96D96 273 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 FAM129AQ9BZQ8 928 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 MCM8Q9UJA3 840 aa12.9□□□□□ -0.34
UBE3D-206ENST00000505226 NCANO14594 1321 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 FAM196BA6NMK8 535 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 CTNND1O60716 968 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 LRRN2O75325 713 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 MARCKSL1P49006 195 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 PLTPP55058 493 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 FAM182BQ5T319 152 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 GPATCH4Q5T3I0 446 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 CERS5Q8N5B7 392 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 RFFLQ8WZ73 363 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 C18orf8Q96DM3 657 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 CHMP6Q96FZ7 201 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 SGSM3Q96HU1 749 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 CHORDC1Q9UHD1 332 aaPredicted RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 GGA1Q9UJY5 639 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 BCS1LQ9Y276 419 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 ATP8B3O60423 1300 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 RPTORQ8N122 1335 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 SMIM23A6NLE4 172 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 KIAA0391O15091 583 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 PPIP5K2O43314 1243 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 FERP16591 822 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 ANXA13P27216 316 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 STAT1P42224 750 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 XRCC4Q13426 336 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 VPS36Q86VN1 386 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 SLFN12Q8IYM2 578 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 UHMK1Q8TAS1 419 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 TBC1D16Q8TBP0 767 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 PIGOQ8TEQ8 1089 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 GRHL1Q9NZI5 618 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 DNAJC12Q9UKB3 198 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 SLC16A3O15427 465 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 TMEM253P0C7T8 217 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 SLC29A2Q14542 456 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 PRR5LQ6MZQ0 368 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 CNBD1Q8NA66 436 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 KRT35Q92764 455 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 PABPC3Q9H361 631 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 SEMA4AQ9H3S1 761 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 DNAJC18Q9H819 358 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 METTL14Q9HCE5 456 aaKnown RBP12.89□□□□□ -0.35
UBE3D-206ENST00000505226 GOPCQ9HD26 462 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 VAV3Q9UKW4 847 aa12.89□□□□□ -0.35
UBE3D-206ENST00000505226 TLDC2A0PJX2 215 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 MSH4O15457 936 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 NUDT17P0C025 328 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 VCAM1P19320 739 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 PTGIRP43119 386 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 MMP13P45452 471 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 PMS2P54278 862 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 SNCBQ16143 134 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 TTC27Q6P3X3 843 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 JAMLQ86YT9 394 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 DAAM1Q9Y4D1 1078 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 GTPBP10A4D1E9 387 aaKnown RBP12.88□□□□□ -0.35
UBE3D-206ENST00000505226 CCDC172P0C7W6 258 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 TRIM49P0CI25 452 aa12.88□□□□□ -0.35
UBE3D-206ENST00000505226 TRIM49CP0CI26 452 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms