RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SUGCT	Q9HAC7	445 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CCDC39	Q9UFE4	941 aa		13.26	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RSPH10B2	B2RC85	870 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489		E9PMD0	336 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RSPH10B	P0C881	870 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RFC2	P35250	354 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	DNM2	P50570	870 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CLCN3	P51790	818 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MRPS6	P82932	125 aa	Known RBP	13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CDC42EP1	Q00587	391 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	IER5	Q5VY09	327 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ADAL	Q6DHV7	355 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SHC4	Q6S5L8	630 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	LRRC71	Q8N4P6	559 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SYT2	Q8N9I0	419 aa	Predicted RBP	13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TCP11	Q8WWU5	503 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	BAD	Q92934	168 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MAP7D2	Q96T17	732 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	BHMT2	Q9H2M3	363 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	XPNPEP1	Q9NQW7	623 aa		13.25	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TTC3	P53804	2025 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CHRNA1	P02708	482 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CYP11B2	P19099	503 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PLCG1	P19174	1290 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CCL23	P55773	120 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MGAT3	Q09327	533 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PPIG	Q13427	754 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	EMC2	Q15006	297 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RRAGB	Q5VZM2	374 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RESP18	Q5W5W9	173 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PADI6	Q6TGC4	694 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MCPH1	Q8NEM0	835 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RASSF8	Q8NHQ8	419 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PLIN2	Q99541	437 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MTR	Q99707	1265 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ATP6V0A4	Q9HBG4	840 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	BLOC1S4	Q9NUP1	217 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	STK17A	Q9UEE5	414 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	AKT3	Q9Y243	479 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TRPV2	Q9Y5S1	764 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CDY2A	Q9Y6F7	541 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SQOR	Q9Y6N5	450 aa		13.24	□□□□□ -0.29
PDLIM5-208	ENST00000504489		M0QZ92	97 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ASAP2	O43150	1006 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	USO1	O60763	962 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	VTN	P04004	478 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PLA2G4B	P0C869	781 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CSF2RA	P15509	400 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CMA1	P23946	247 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MAGEA10	P43363	369 aa	Predicted RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SLC12A3	P55017	1021 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MDM2	Q00987	491 aa	Predicted RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	FPGS	Q05932	587 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	DRP2	Q13474	957 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MBTPS1	Q14703	1052 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GPNMB	Q14956	572 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CCDC73	Q6ZRK6	1079 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RPUSD2	Q8IZ73	545 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	LRRC15	Q8TF66	581 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PSPC1	Q8WXF1	523 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RAD54L	Q92698	747 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SCLY	Q96I15	445 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GDF15	Q99988	308 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CELF4	Q9BZC1	486 aa	Known RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GDPD2	Q9HCC8	539 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	FAM13B	Q9NYF5	915 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	SUCLA2	Q9P2R7	463 aa	Predicted RBP	13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TRIP11	Q15643	1979 aa		13.23	□□□□□ -0.29
PDLIM5-208	ENST00000504489		A0A087X0B3	334 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489		A0A1W2PQ27	194 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489		A0A1W2PQ64	194 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489		A0A1W2PQD8	194 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GPR32	O75388	356 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CXCL10	P02778	98 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PFKM	P08237	780 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CTSH	P09668	335 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	BMP8B	P34820	402 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ARL2	P36404	184 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CRYBB1	P53674	252 aa	Predicted RBP	13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	NLRP11	P59045	1033 aa	Known RBP	13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TMEM62	Q0P6H9	643 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MXD4	Q14582	209 aa	Predicted RBP	13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	NAALADL2	Q58DX5	795 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RINT1	Q6NUQ1	792 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	C1orf186	Q6ZWK4	172 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	USP38	Q8NB14	1042 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PRPF31	Q8WWY3	499 aa	Known RBP	13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	LARP4B	Q92615	738 aa	Known RBP	13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TMEM143	Q96AN5	459 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	VWCE	Q96DN2	955 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TIPIN	Q9BVW5	301 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ADAMTS10	Q9H324	1103 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	IL23A	Q9NPF7	189 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	KCND2	Q9NZV8	630 aa		13.22	□□□□□ -0.29
PDLIM5-208	ENST00000504489	FAM237A	A0A1B0GTK4	181 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	NBN	O60934	754 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	GUCY2C	P25092	1073 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	STAT6	P42226	847 aa		13.21	□□□□□ -0.29

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