RNA–Protein interactions for RNA: ENST00000497960.5

NUP50-219, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 986 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-219ENST00000497960 IGKV6-21A0A0C4DH24 114 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 MGEA5O60502 916 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 MAFO75444 373 aaPredicted RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 DARSP14868 501 aaKnown RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 ZSCAN20P17040 1043 aaPredicted RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 CTNNB1P35222 781 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 TXKP42681 527 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 CYP4A11Q02928 519 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 SPIRE1Q08AE8 756 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 GPM6BQ13491 265 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 TPH2Q8IWU9 490 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 CMTR2Q8IYT2 770 aaKnown RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 SLC7A3Q8WY07 619 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 ZNF689Q96CS4 500 aaPredicted RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 DYDC2Q96IM9 177 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 GCOM2Q9BZD3 368 aaPredicted RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 RC3H2Q9HBD1 1191 aaKnown RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 RGL1Q9NZL6 768 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 SUCLA2Q9P2R7 463 aaPredicted RBP17.15■□□□□ 0.34
NUP50-219ENST00000497960 COL4A6Q14031 1691 aa17.15■□□□□ 0.34
NUP50-219ENST00000497960 A0A0C4DFX4 3053 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 H3BNC9 293 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 RB1P06400 928 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 YWHABP31946 246 aaKnown RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 MCM7P33993 719 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 BMPR1AP36894 532 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 RFC5P40937 340 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 POLGP54098 1239 aaPredicted RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 NPEPPSP55786 919 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 MRPS5P82675 430 aaKnown RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 DRP2Q13474 957 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 CTTNQ14247 550 aaKnown RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 TJAP1Q5JTD0 557 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 CRIPAKQ8N1N5 446 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 SPRYD3Q8NCJ5 442 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 NEK9Q8TD19 979 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 SYMPKQ92797 1274 aaKnown RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 EIF2AK1Q9BQI3 630 aaKnown RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 C11orf84Q9BUA3 381 aaPredicted RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 WRAP73Q9P2S5 460 aaPredicted RBP17.14■□□□□ 0.33
NUP50-219ENST00000497960 PRUNE2Q8WUY3 3088 aa17.14■□□□□ 0.33
NUP50-219ENST00000497960 C9IYK1 514 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 H3BQV1 296 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 WNT7AO00755 349 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 ORC2Q13416 577 aaPredicted RBP17.13■□□□□ 0.33
NUP50-219ENST00000497960 XKR9Q5GH70 373 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 ZNF410Q86VK4 478 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 RHPN2Q8IUC4 686 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 CLP1Q92989 425 aaKnown RBP17.13■□□□□ 0.33
NUP50-219ENST00000497960 MRPL38Q96DV4 380 aaKnown RBP17.13■□□□□ 0.33
NUP50-219ENST00000497960 MTMR9Q96QG7 549 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 INO80BQ9C086 356 aaPredicted RBP17.13■□□□□ 0.33
NUP50-219ENST00000497960 ATP6V0A4Q9HBG4 840 aa17.13■□□□□ 0.33
NUP50-219ENST00000497960 NOL7Q9UMY1 257 aaKnown RBP17.13■□□□□ 0.33
NUP50-219ENST00000497960 A0A087WZ62 844 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 C5orf67F2Z3F1 127 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 SLITRK3O94933 977 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 TRAPPC10P48553 1259 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 DSC3Q14574 896 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 ZNF174Q15697 407 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 AAK1Q2M2I8 961 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 PAN2Q504Q3 1202 aaKnown RBP17.12■□□□□ 0.33
NUP50-219ENST00000497960 NOSTRINQ8IVI9 506 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 CCDC43Q96MW1 224 aaKnown RBP17.12■□□□□ 0.33
NUP50-219ENST00000497960 ASB2Q96Q27 587 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 HSD17B14Q9BPX1 270 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 FDXACB1Q9BRP7 624 aaPredicted RBP17.12■□□□□ 0.33
NUP50-219ENST00000497960 PLVAPQ9BX97 442 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 COL25A1Q9BXS0 654 aaPredicted RBP17.12■□□□□ 0.33
NUP50-219ENST00000497960 TMEM60Q9H2L4 133 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 ELAC1Q9H777 363 aaKnown RBP17.12■□□□□ 0.33
NUP50-219ENST00000497960 TMEM161AQ9NX61 479 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 COG5Q9UP83 839 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 MRPL42Q9Y6G3 142 aaKnown RBP17.12■□□□□ 0.33
NUP50-219ENST00000497960 EYSQ5T1H1 3165 aa17.12■□□□□ 0.33
NUP50-219ENST00000497960 MYH15Q9Y2K3 1946 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 TTC28Q96AY4 2481 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 COL4A4P53420 1690 aaPredicted RBP17.11■□□□□ 0.33
NUP50-219ENST00000497960 MYO7AQ13402 2215 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 GAS2O43903 313 aaKnown RBP17.11■□□□□ 0.33
NUP50-219ENST00000497960 PDCP20941 246 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 SFPQP23246 707 aaKnown RBP eCLIP17.11■□□□□ 0.33
NUP50-219ENST00000497960 FAM189BP81408 668 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 TIGD5Q53EQ6 642 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 TTC38Q5R3I4 469 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 LARP1BQ659C4 914 aaKnown RBP17.11■□□□□ 0.33
NUP50-219ENST00000497960 ZNF579Q8NAF0 562 aaKnown RBP17.11■□□□□ 0.33
NUP50-219ENST00000497960 TCP11Q8WWU5 503 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 PSPC1Q8WXF1 523 aaKnown RBP17.11■□□□□ 0.33
NUP50-219ENST00000497960 HLA-CQ95604 372 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 NLRP4Q96MN2 994 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 DHX33Q9H6R0 707 aaKnown RBP17.11■□□□□ 0.33
NUP50-219ENST00000497960 DACT1Q9NYF0 836 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 BRWD1Q9NSI6 2320 aa17.11■□□□□ 0.33
NUP50-219ENST00000497960 VPS37CA5D8V6 355 aaPredicted RBP17.1■□□□□ 0.33
NUP50-219ENST00000497960 TBKBP1A7MCY6 615 aa17.1■□□□□ 0.33
NUP50-219ENST00000497960 HOXA2O43364 376 aa17.1■□□□□ 0.33
NUP50-219ENST00000497960 LYPLA2O95372 231 aa17.1■□□□□ 0.33
NUP50-219ENST00000497960 OR52Z1P0C646 297 aa17.1■□□□□ 0.33
NUP50-219ENST00000497960 LINC00271P0C7V0 271 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms