RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ST3GAL5Q9UNP4 418 aa17.77■□□□□ 0.44
LIME1-209ENST00000494776 DENND3A2RUS2 1198 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 BMP15O95972 392 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 IBSPP21815 317 aaPredicted RBP17.76■□□□□ 0.43
LIME1-209ENST00000494776 RARRES1P49788 294 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 POTEGQ6S5H5 508 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 IGSF22Q8N9C0 903 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 TOP1MTQ969P6 601 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 NLRP4Q96MN2 994 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 YME1L1Q96TA2 773 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 ATP6V0A4Q9HBG4 840 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 ERVK-5Q9HDB9 667 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 STXBP5LQ9Y2K9 1186 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 INSL6Q9Y581 213 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 SIP14410 1827 aa17.76■□□□□ 0.43
LIME1-209ENST00000494776 LAMA2P24043 3122 aaKnown RBP17.76■□□□□ 0.43
LIME1-209ENST00000494776 VWA3AA6NCI4 1184 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 DGAT1O75907 488 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 MUTP22033 750 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 IL17AQ16552 155 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 ARL6IP4Q66PJ3 421 aaKnown RBP17.75■□□□□ 0.43
LIME1-209ENST00000494776 FAM43BQ6ZT52 329 aaPredicted RBP17.75■□□□□ 0.43
LIME1-209ENST00000494776 ZNF410Q86VK4 478 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 FAM228AQ86W67 206 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 KSR1Q8IVT5 923 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 PRPF31Q8WWY3 499 aaKnown RBP17.75■□□□□ 0.43
LIME1-209ENST00000494776 INO80BQ9C086 356 aaPredicted RBP17.75■□□□□ 0.43
LIME1-209ENST00000494776 MTMR6Q9Y217 621 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 COL4A3BPQ9Y5P4 624 aa17.75■□□□□ 0.43
LIME1-209ENST00000494776 A0A087WZ62 844 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 ARHGEF35A5YM69 484 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 PP2D1A8MPX8 630 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 USO1O60763 962 aaKnown RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 SRGAP2CP0DJJ0 459 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 DARSP14868 501 aaKnown RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 ZSCAN20P17040 1043 aaPredicted RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 RESTQ13127 1097 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 GRIN2CQ14957 1233 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 SF3A1Q15459 793 aaKnown RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 ZRSR1Q15695 479 aaKnown RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 SLC17A8Q8NDX2 589 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 ADAM2Q99965 735 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 FDXACB1Q9BRP7 624 aaPredicted RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 TSPYL2Q9H2G4 693 aaPredicted RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 TMX1Q9H3N1 280 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 ZSCAN16Q9H4T2 348 aaPredicted RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 DBR1Q9UK59 544 aaKnown RBP17.74■□□□□ 0.43
LIME1-209ENST00000494776 LRFN2Q9ULH4 789 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 KIAA1024Q9UPX6 916 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 MICAL3Q7RTP6 2002 aa17.74■□□□□ 0.43
LIME1-209ENST00000494776 ASAP2O43150 1006 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 CSDE1O75534 798 aaKnown RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 STAG3L1P0CL83 205 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 PDIA4P13667 645 aaKnown RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 FGFR4P22455 802 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 SFPQP23246 707 aaKnown RBP eCLIP17.73■□□□□ 0.43
LIME1-209ENST00000494776 CDC25AP30304 524 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 LAMTOR4Q0VGL1 99 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 MXD4Q14582 209 aaPredicted RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 MAEAQ7L5Y9 396 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 RTN4RL1Q86UN2 441 aaPredicted RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 LINC01599Q8WXQ3 324 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 CDK5RAP3Q96JB5 506 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 GUCD1Q96NT3 240 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 CDX2Q99626 313 aaPredicted RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 DDX19AQ9NUU7 478 aaKnown RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 RNF216Q9NWF9 866 aaPredicted RBP17.73■□□□□ 0.43
LIME1-209ENST00000494776 GBF1Q92538 1859 aa17.73■□□□□ 0.43
LIME1-209ENST00000494776 LCHNA4D1U4 455 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 TAP1Q03518 808 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 CEBPZQ03701 1054 aaKnown RBP17.72■□□□□ 0.43
LIME1-209ENST00000494776 TFDP1Q14186 410 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 ECM1Q16610 540 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 FAM173BQ6P4H8 233 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 RNF149Q8NC42 400 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 MYLIPQ8WY64 445 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 PRDM12Q9H4Q4 367 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 CERS4Q9HA82 394 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 XPNPEP1Q9NQW7 623 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 C1orf112Q9NSG2 853 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 DNM3Q9UQ16 869 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 PCDHB7Q9Y5E2 793 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 CLIC4Q9Y696 253 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 LOXHD1Q8IVV2 1947 aa17.72■□□□□ 0.43
LIME1-209ENST00000494776 MGEA5O60502 916 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 PHKA2P46019 1235 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 SARSP49591 514 aaKnown RBP17.71■□□□□ 0.43
LIME1-209ENST00000494776 HTRA4P83105 476 aaPredicted RBP17.71■□□□□ 0.43
LIME1-209ENST00000494776 FAM102BQ5T8I3 360 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 FOXD4L5Q5VV16 416 aaPredicted RBP17.71■□□□□ 0.43
LIME1-209ENST00000494776 PADI6Q6TGC4 694 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 SLC24A5Q71RS6 500 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 CATSPER4Q7RTX7 472 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 NPAS4Q8IUM7 802 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 MCPH1Q8NEM0 835 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 FOXD4L4Q8WXT5 416 aaPredicted RBP17.71■□□□□ 0.43
LIME1-209ENST00000494776 ARNTL2Q8WYA1 636 aa17.71■□□□□ 0.43
LIME1-209ENST00000494776 GAS2L1Q99501 681 aaPredicted RBP17.71■□□□□ 0.43
LIME1-209ENST00000494776 POLR3FQ9H1D9 316 aaPredicted RBP17.71■□□□□ 0.43
LIME1-209ENST00000494776 BHMT2Q9H2M3 363 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms