RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 ZNF689Q96CS4 500 aaPredicted RBP16.89■□□□□ 0.29
USP39-217ENST00000491659 ZNF668Q96K58 619 aaPredicted RBP16.89■□□□□ 0.29
USP39-217ENST00000491659 CEP170P1Q96L14 293 aa16.89■□□□□ 0.29
USP39-217ENST00000491659 CEP89Q96ST8 783 aa16.89■□□□□ 0.29
USP39-217ENST00000491659 RGS18Q9NS28 235 aa16.89■□□□□ 0.29
USP39-217ENST00000491659 RGL1Q9NZL6 768 aa16.89■□□□□ 0.29
USP39-217ENST00000491659 WRAP73Q9P2S5 460 aaPredicted RBP16.89■□□□□ 0.29
USP39-217ENST00000491659 NOL7Q9UMY1 257 aaKnown RBP16.89■□□□□ 0.29
USP39-217ENST00000491659 PCDHB7Q9Y5E2 793 aa16.89■□□□□ 0.29
USP39-217ENST00000491659 DARSP14868 501 aaKnown RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 ZSCAN20P17040 1043 aaPredicted RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 RFC5P40937 340 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 ORC2Q13416 577 aaPredicted RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 DRP2Q13474 957 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 GPM6BQ13491 265 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 CTTNQ14247 550 aaKnown RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 SLC24A5Q71RS6 500 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 RHPN2Q8IUC4 686 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 NOSTRINQ8IVI9 506 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 TPH2Q8IWU9 490 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 CCDC43Q96MW1 224 aaKnown RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 TBC1D32Q96NH3 1257 aa16.88■□□□□ 0.29
USP39-217ENST00000491659 GCOM2Q9BZD3 368 aaPredicted RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 SUCLA2Q9P2R7 463 aaPredicted RBP16.88■□□□□ 0.29
USP39-217ENST00000491659 H3BNC9 293 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 RB1P06400 928 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 MCM2P49736 904 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 NPEPPSP55786 919 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 PAN2Q504Q3 1202 aaKnown RBP16.87■□□□□ 0.29
USP39-217ENST00000491659 TJAP1Q5JTD0 557 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 ZNF410Q86VK4 478 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 CRIPAKQ8N1N5 446 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 ATXN2LQ8WWM7 1075 aaKnown RBP16.87■□□□□ 0.29
USP39-217ENST00000491659 CLP1Q92989 425 aaKnown RBP16.87■□□□□ 0.29
USP39-217ENST00000491659 MTMR9Q96QG7 549 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 EIF2AK1Q9BQI3 630 aaKnown RBP16.87■□□□□ 0.29
USP39-217ENST00000491659 C11orf84Q9BUA3 381 aaPredicted RBP16.87■□□□□ 0.29
USP39-217ENST00000491659 ATG2AQ2TAZ0 1938 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 UNC80Q8N2C7 3258 aa16.87■□□□□ 0.29
USP39-217ENST00000491659 C9IYK1 514 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 C5orf67F2Z3F1 127 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 GAS2O43903 313 aaKnown RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 OR52Z1P0C646 297 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 SFPQP23246 707 aaKnown RBP eCLIP16.86■□□□□ 0.29
USP39-217ENST00000491659 BMPR1AP36894 532 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 TRAPPC10P48553 1259 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 DSC3Q14574 896 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 TIGD5Q53EQ6 642 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 XKR9Q5GH70 373 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 TTC38Q5R3I4 469 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 SYMPKQ92797 1274 aaKnown RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 MRPL38Q96DV4 380 aaKnown RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 TMX3Q96JJ7 454 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 NLRP4Q96MN2 994 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 INO80BQ9C086 356 aaPredicted RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 TMEM60Q9H2L4 133 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 DHX33Q9H6R0 707 aaKnown RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 BMP2KQ9NSY1 1161 aaPredicted RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 TMEM161AQ9NX61 479 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 COL4A3BPQ9Y5P4 624 aa16.86■□□□□ 0.29
USP39-217ENST00000491659 MRPL42Q9Y6G3 142 aaKnown RBP16.86■□□□□ 0.29
USP39-217ENST00000491659 A0A087WZ62 844 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 POTEMA6NI47 508 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 SLITRK3O94933 977 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 LINC00271P0C7V0 271 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 GATMP50440 423 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 MRPS5P82675 430 aaKnown RBP16.85■□□□□ 0.29
USP39-217ENST00000491659 EMC2Q15006 297 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 ZNF174Q15697 407 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 ZNF579Q8NAF0 562 aaKnown RBP16.85■□□□□ 0.29
USP39-217ENST00000491659 TCP11Q8WWU5 503 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 PSPC1Q8WXF1 523 aaKnown RBP16.85■□□□□ 0.29
USP39-217ENST00000491659 MTRQ99707 1265 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 FDXACB1Q9BRP7 624 aaPredicted RBP16.85■□□□□ 0.29
USP39-217ENST00000491659 PLVAPQ9BX97 442 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 COL25A1Q9BXS0 654 aaPredicted RBP16.85■□□□□ 0.29
USP39-217ENST00000491659 ELAC1Q9H777 363 aaKnown RBP16.85■□□□□ 0.29
USP39-217ENST00000491659 ATP6V0A4Q9HBG4 840 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 COG5Q9UP83 839 aa16.85■□□□□ 0.29
USP39-217ENST00000491659 TBKBP1A7MCY6 615 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 HOXA2O43364 376 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 LYPLA2O95372 231 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 CD2BP2O95400 341 aaKnown RBP16.84■□□□□ 0.29
USP39-217ENST00000491659 FGFR4P22455 802 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 AAK1Q2M2I8 961 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 ERMNQ8TAM6 284 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 ASB2Q96Q27 587 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 HSD17B14Q9BPX1 270 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 LMAN2LQ9H0V9 348 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 ANKEF1Q9NU02 776 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 DACT1Q9NYF0 836 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 PRUNE2Q8WUY3 3088 aa16.84■□□□□ 0.29
USP39-217ENST00000491659 CSDE1O75534 798 aaKnown RBP16.83■□□□□ 0.28
USP39-217ENST00000491659 U2AF2P26368 475 aaKnown RBP eCLIP16.83■□□□□ 0.28
USP39-217ENST00000491659 TECP42680 631 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 SPOUT1Q5T280 376 aaKnown RBP16.83■□□□□ 0.28
USP39-217ENST00000491659 FAM102BQ5T8I3 360 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 CATSPER4Q7RTX7 472 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 KSR1Q8IVT5 923 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 P2RX5Q93086 422 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms