RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 KREMEN2Q8NCW0 462 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 CYP2W1Q8TAV3 490 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 CASP10Q92851 521 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 TMEM87BQ96K49 555 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 NECTIN4Q96NY8 510 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 TCF25Q9BQ70 676 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 RNF19AQ9NV58 838 aa9.34□□□□□ -0.91
USP39-216ENST00000490193 PTPRZ1P23471 2315 aaPredicted RBP9.33□□□□□ -0.92
USP39-216ENST00000490193 PRR23AA6NEV1 266 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 CCDC69A6NI79 296 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 GPR32O75388 356 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 C22orf31O95567 290 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 BRD1O95696 1058 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 CCNE2O96020 404 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 MCM5P33992 734 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 SREBF1P36956 1147 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 APOBRQ0VD83 1088 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 FAM160B1Q5W0V3 765 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 KCNT2Q6UVM3 1135 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 LRRC55Q6ZSA7 311 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 ZBTB33Q86T24 672 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 CCDC60Q8IWA6 550 aaPredicted RBP9.33□□□□□ -0.92
USP39-216ENST00000490193 CMTR1Q8N1G2 835 aaKnown RBP9.33□□□□□ -0.92
USP39-216ENST00000490193 LRRC43Q8N309 656 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 TMEM105Q8N8V8 129 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 ZNF558Q96NG5 402 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 CASD1Q96PB1 797 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 ADAM7Q9H2U9 754 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 POMKQ9H5K3 350 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 RIC8AQ9NPQ8 531 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 ENTPD7Q9NQZ7 604 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 GINS2Q9Y248 185 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 RBM8AQ9Y5S9 174 aaKnown RBP9.33□□□□□ -0.92
USP39-216ENST00000490193 HCFC2Q9Y5Z7 792 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 ZNF292O60281 2723 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 WDR87Q6ZQQ6 2873 aa9.33□□□□□ -0.92
USP39-216ENST00000490193 GVINP1Q7Z2Y8 2422 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 hCG_1642624A0A1W2PR95 340 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 C2CD4DB7Z1M9 353 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 hCG_1984214I3L0E3 225 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 DHX15O43143 795 aaKnown RBP9.32□□□□□ -0.92
USP39-216ENST00000490193 ATP4AP20648 1035 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 MTHFRP42898 656 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 CLK2P49760 499 aaKnown RBP9.32□□□□□ -0.92
USP39-216ENST00000490193 CLCN5P51795 746 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 KRT17Q04695 432 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 AP3B2Q13367 1082 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 SMC1AQ14683 1233 aaKnown RBP9.32□□□□□ -0.92
USP39-216ENST00000490193 KIZQ2M2Z5 673 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 WWC2Q6AWC2 1192 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 CES5AQ6NT32 575 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 TYW1BQ6NUM6 668 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 LLGL2Q6P1M3 1020 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 PDXDC2PQ6P474 469 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 NFXL1Q6ZNB6 911 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 TMC7Q7Z402 723 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 HEATR3Q7Z4Q2 680 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 SGMS1Q86VZ5 419 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 ZDHHC14Q8IZN3 488 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 SLC39A11Q8N1S5 342 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 LINC01465Q8N7H1 131 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 ZNF713Q8N859 430 aaPredicted RBP9.32□□□□□ -0.92
USP39-216ENST00000490193 MRPL43Q8N983 215 aaKnown RBP9.32□□□□□ -0.92
USP39-216ENST00000490193 FANCBQ8NB91 859 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 BBXQ8WY36 941 aaPredicted RBP9.32□□□□□ -0.92
USP39-216ENST00000490193 RSPH1Q8WYR4 309 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 OSMRQ99650 979 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 ANO3Q9BYT9 981 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 ZNF302Q9NR11 478 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 SPG21Q9NZD8 308 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 USTQ9Y2C2 406 aa9.32□□□□□ -0.92
USP39-216ENST00000490193 CNTNAP5Q8WYK1 1306 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 IGLV3-22A0A075B6J6 115 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 C2orf71A6NGG8 1288 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 BACH1O14867 736 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 RXRAP19793 462 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 IBSPP21815 317 aaPredicted RBP9.31□□□□□ -0.92
USP39-216ENST00000490193 SP100P23497 879 aaPredicted RBP9.31□□□□□ -0.92
USP39-216ENST00000490193 FUT2Q10981 343 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 COL9A3Q14050 684 aaPredicted RBP9.31□□□□□ -0.92
USP39-216ENST00000490193 MCTP2Q6DN12 878 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 KIAA1841Q6NSI8 718 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 MIS18BP1Q6P0N0 1132 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 ERMP1Q7Z2K6 904 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 ZNF598Q86UK7 904 aaKnown RBP9.31□□□□□ -0.92
USP39-216ENST00000490193 ECHDC2Q86YB7 292 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 CRYGNQ8WXF5 182 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 APOL5Q9BWW9 433 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 GLT8D2Q9H1C3 349 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 TSHZ2Q9NRE2 1034 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 DZANK1Q9NVP4 752 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 CDH22Q9UJ99 828 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 MAFBQ9Y5Q3 323 aaPredicted RBP9.31□□□□□ -0.92
USP39-216ENST00000490193 IRAK3Q9Y616 596 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 SLC12A7Q9Y666 1083 aa9.31□□□□□ -0.92
USP39-216ENST00000490193 C2orf16Q68DN1 1984 aa9.3□□□□□ -0.92
USP39-216ENST00000490193 DMXL1Q9Y485 3027 aa9.3□□□□□ -0.92
USP39-216ENST00000490193 A0A0U1RQF3 1178 aa9.3□□□□□ -0.92
USP39-216ENST00000490193 CARNS1A5YM72 827 aa9.3□□□□□ -0.92
USP39-216ENST00000490193 FAM86B1E9PN63 330 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms