RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ACAP1Q15027 740 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 OR5AN1Q8NGI8 311 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 SREK1Q8WXA9 508 aaKnown RBP4.7□□□□□ -1.66
CPSF3-205ENST00000489629 HAPLN2Q9GZV7 340 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 SLC6A15Q9H2J7 730 aa4.7□□□□□ -1.66
CPSF3-205ENST00000489629 ZNF703Q9H7S9 590 aaPredicted RBP4.7□□□□□ -1.66
CPSF3-205ENST00000489629 UBA6A0AVT1 1052 aaPredicted RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 CBX4O00257 560 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 PPP1R12AO14974 1030 aaPredicted RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 H2AFYO75367 372 aaKnown RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 RFPL3O75679 317 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 CYP17A1P05093 508 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 PTX3P26022 381 aaPredicted RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 EPHA7Q15375 998 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 LSM12Q3MHD2 195 aaKnown RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 TTC38Q5R3I4 469 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 PIK3R6Q5UE93 754 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 SLFN12LQ6IEE8 588 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 D2HGDHQ8N465 521 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 KIAA1958Q8N8K9 716 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 SH3TC2Q8TF17 1288 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 GFM2Q969S9 779 aaKnown RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 SLC7A6OSQ96CW6 309 aaPredicted RBP4.69□□□□□ -1.66
CPSF3-205ENST00000489629 TMEM176AQ96HP8 235 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 GPHA2Q96T91 129 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 MPHOSPH9Q99550 1183 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 TMEM260Q9NX78 707 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 DENND2AQ9ULE3 1009 aa4.69□□□□□ -1.66
CPSF3-205ENST00000489629 H7C1D1 291 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 MYBPC3Q14896 1274 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 DGKDQ16760 1214 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 FNDC7Q5VTL7 733 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 CDCA2Q69YH5 1023 aaPredicted RBP4.68□□□□□ -1.66
CPSF3-205ENST00000489629 SGMS1Q86VZ5 419 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 TMPRSS6Q8IU80 811 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 AMER2Q8N7J2 671 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 MRFAP1L1Q96HT8 127 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 ORAI3Q9BRQ5 295 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 MENTQ9BUN1 341 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 CSRNP2Q9H175 543 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 CABP5Q9NP86 173 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 AURKAIP1Q9NWT8 199 aaPredicted RBP4.68□□□□□ -1.66
CPSF3-205ENST00000489629 KCMF1Q9P0J7 381 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 CEP72Q9P209 647 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 SH3BP1Q9Y3L3 701 aa4.68□□□□□ -1.66
CPSF3-205ENST00000489629 CAPN14A8MX76 684 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 ZNF202O95125 648 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 JMJD7P0C870 316 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 SLC9A1P19634 815 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 HHEXQ03014 270 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 ABHD18Q0P651 414 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 PABPC4Q13310 644 aaKnown RBP eCLIP4.67□□□□□ -1.66
CPSF3-205ENST00000489629 ZNF174Q15697 407 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 ESRP1Q6NXG1 681 aaKnown RBP4.67□□□□□ -1.66
CPSF3-205ENST00000489629 KANSL1Q7Z3B3 1105 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 BMP8AQ7Z5Y6 402 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 CLEC14AQ86T13 490 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 THEMISQ8N1K5 641 aaPredicted RBP4.67□□□□□ -1.66
CPSF3-205ENST00000489629 PLEKHG4BQ96PX9 1271 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 ELF4Q99607 663 aaPredicted RBP4.67□□□□□ -1.66
CPSF3-205ENST00000489629 PITHD1Q9GZP4 211 aaPredicted RBP4.67□□□□□ -1.66
CPSF3-205ENST00000489629 PCIF1Q9H4Z3 704 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 SLITRK6Q9H5Y7 841 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 GIT1Q9Y2X7 761 aa4.67□□□□□ -1.66
CPSF3-205ENST00000489629 RBM8AQ9Y5S9 174 aaKnown RBP4.67□□□□□ -1.66
CPSF3-205ENST00000489629 A0A1W2PRX2 142 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 FAM83GA6ND36 823 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 ASMTLO95671 621 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 RANGAP1P46060 587 aaPredicted RBP4.66□□□□□ -1.66
CPSF3-205ENST00000489629 BPIFB4P59827 614 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 ADCY1Q08828 1119 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 FHL2Q14192 279 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 PRAMEF9Q5VWM5 478 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 UBE2R2Q712K3 238 aaPredicted RBP4.66□□□□□ -1.66
CPSF3-205ENST00000489629 NME9Q86XW9 330 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 ANKRD53Q8N9V6 530 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 PLA2G15Q8NCC3 412 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 RPL10LQ96L21 214 aaKnown RBP4.66□□□□□ -1.66
CPSF3-205ENST00000489629 TUBGCP5Q96RT8 1024 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 ZSWIM4Q9H7M6 989 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 INTS7Q9NVH2 962 aaKnown RBP4.66□□□□□ -1.66
CPSF3-205ENST00000489629 POLR3BQ9NW08 1133 aaPredicted RBP4.66□□□□□ -1.66
CPSF3-205ENST00000489629 SPO11Q9Y5K1 396 aa4.66□□□□□ -1.66
CPSF3-205ENST00000489629 A0A0A6YYJ9 748 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 CYP27B1O15528 508 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 VSIG10L2P0DP72 767 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 ATP2A2P16615 1042 aaKnown RBP4.65□□□□□ -1.67
CPSF3-205ENST00000489629 MCM7P33993 719 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 FLT3P36888 993 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 BCAR1P56945 870 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 TCIRG1Q13488 830 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 TUBA3CQ13748 450 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 RRP1BQ14684 758 aaKnown RBP4.65□□□□□ -1.67
CPSF3-205ENST00000489629 CCDC144BQ3MJ40 725 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 CFAP100Q494V2 611 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 GAGE13Q4V321 117 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 TUBA3EQ6PEY2 450 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 GAREM2Q75VX8 874 aa4.65□□□□□ -1.67
CPSF3-205ENST00000489629 ANKRD35Q8N283 1001 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms