RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 F2P00734 622 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 HOXD10P28358 340 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 NMT1P30419 496 aaKnown RBP12.67□□□□□ -0.38
C9orf3-220ENST00000489318 ABCD1P33897 745 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 ARL2P36404 184 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 GTF2BQ00403 316 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 DGKDQ16760 1214 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 KNOP1Q1ED39 458 aaKnown RBP12.67□□□□□ -0.38
C9orf3-220ENST00000489318 MAP3K21Q5TCX8 1036 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 CSGALNACT2Q8N6G5 542 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 CD99L2Q8TCZ2 262 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 PXYLP1Q8TE99 480 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 BSNDQ8WZ55 320 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 ERO1AQ96HE7 468 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 TSG101Q99816 390 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 JPH2Q9BR39 696 aaPredicted RBP12.67□□□□□ -0.38
C9orf3-220ENST00000489318 TRIM5Q9C035 493 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 UPF3AQ9H1J1 476 aaKnown RBP12.67□□□□□ -0.38
C9orf3-220ENST00000489318 KCNG1Q9UIX4 513 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 PCDHB13Q9Y5F0 798 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 SCN10AQ9Y5Y9 1956 aa12.67□□□□□ -0.38
C9orf3-220ENST00000489318 A0A1B0GTH6 734 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 K7ENM7 598 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 CBFA2T2O43439 604 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 DUSP11O75319 330 aaKnown RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 PRPF6O94906 941 aaKnown RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 ZNF286BP0CG31 522 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 NPTX2P47972 431 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 CPT1AP50416 773 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 PRMT2P55345 433 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 MARSP56192 900 aaKnown RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 FKBP3Q00688 224 aaKnown RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 DMP1Q13316 513 aaPredicted RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 TPD52L1Q16890 204 aaPredicted RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 TCP11X2Q5H9J9 407 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 ZNF484Q5JVG2 852 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 FAM102BQ5T8I3 360 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 FAM114A1Q8IWE2 563 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 LINC01465Q8N7H1 131 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 TMEM161BQ8NDZ6 487 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 CEP63Q96MT8 703 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 CTAGE1Q96RT6 745 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 XPO4Q9C0E2 1151 aaKnown RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 POLR3FQ9H1D9 316 aaPredicted RBP12.66□□□□□ -0.38
C9orf3-220ENST00000489318 POLD4Q9HCU8 107 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 ARHGAP28Q9P2N2 729 aa12.66□□□□□ -0.38
C9orf3-220ENST00000489318 ADGRA3Q8IWK6 1321 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 KCNJ18B7U540 433 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 H0YCG3 227 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 H3BRB1 525 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 HAS3O00219 553 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 SEPT4O43236 478 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TGFB1I1O43294 461 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 FKTNO75072 461 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 C22orf31O95567 290 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 FGFR1OPO95684 399 aaKnown RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 HMGCRP04035 888 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 MARK3P27448 753 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 NAMPTP43490 491 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 SMTNP53814 917 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 PEX3P56589 373 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 GJA9P57773 515 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 SNRPFP62306 86 aaKnown RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 PLCB2Q00722 1185 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 KCNA1Q09470 495 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TBC1D8BQ0IIM8 1120 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 KCNJ12Q14500 433 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 PPP2R5AQ15172 486 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 ZC2HC1CQ53FD0 456 aaPredicted RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 MAEAQ7L5Y9 396 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TRMT1LQ7Z2T5 733 aaKnown RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 HAUS6Q7Z4H7 955 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 MAP4K3Q8IVH8 894 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 NELFCDQ8IXH7 590 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 C12orf56Q8IXR9 622 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TCP11Q8WWU5 503 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 LENG1Q96BZ8 264 aaPredicted RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 SRRTQ9BXP5 876 aaKnown RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 RNPEPQ9H4A4 650 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TUT1Q9H6E5 874 aaKnown RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TMEM206Q9H813 350 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 INTS13Q9NVM9 706 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 IFNKQ9P0W0 207 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 CGNQ9P2M7 1197 aaKnown RBP12.65□□□□□ -0.38
C9orf3-220ENST00000489318 TRPC6Q9Y210 931 aa12.65□□□□□ -0.38
C9orf3-220ENST00000489318 DYNC1LI2O43237 492 aaPredicted RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 CALUO43852 315 aaPredicted RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 SERPINC1P01008 464 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 INSRRP14616 1297 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 HSPA6P17066 643 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 GLRA2P23416 452 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 SOX10P56693 466 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 UBASH3AP57075 661 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 CACNB2Q08289 660 aaPredicted RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 MKRN4PQ13434 485 aaPredicted RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 MYBPC2Q14324 1141 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 ARHGEF6Q15052 776 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 KRT31Q15323 416 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 IER5Q5VY09 327 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 CDCA2Q69YH5 1023 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms