RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 HVCN1Q96D96 273 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 NAP1L3Q99457 506 aaPredicted RBP13.24□□□□□ -0.29
COL3A1-206ENST00000487010 CARD9Q9H257 536 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 SERPINB13Q9UIV8 391 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 MCM8Q9UJA3 840 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 DAAM1Q9Y4D1 1078 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 PCDHA1Q9Y5I3 950 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 FAM187AA6NFU0 413 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 TBX3O15119 743 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 DNAJC8O75937 253 aaPredicted RBP13.24□□□□□ -0.29
COL3A1-206ENST00000487010 GCNT3O95395 438 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 SHBGP04278 402 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 SHMT1P34896 483 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 PMS2P54278 862 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 ARHGAP4P98171 946 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 KCNA1Q09470 495 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 PRPF4BQ13523 1007 aaKnown RBP13.24□□□□□ -0.29
COL3A1-206ENST00000487010 Q4G0T1 1027 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 PRR16Q569H4 304 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 FAM228AQ86W67 206 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 MAGEC3Q8TD91 643 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 CTNNBL1Q8WYA6 563 aaPredicted RBP13.24□□□□□ -0.29
COL3A1-206ENST00000487010 SYT11Q9BT88 431 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 STK33Q9BYT3 514 aa13.24□□□□□ -0.29
COL3A1-206ENST00000487010 PABPC3Q9H361 631 aaKnown RBP13.24□□□□□ -0.29
COL3A1-206ENST00000487010 DDX4Q9NQI0 724 aaKnown RBP13.24□□□□□ -0.29
COL3A1-206ENST00000487010 IGSF9BQ9UPX0 1349 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 GOLGA6L10A0A0M3HER8 536 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 SPDYE3A6NKU9 549 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 MEIS2O14770 477 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 TGFB1I1O43294 461 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 CTNND1O60716 968 aaKnown RBP13.23□□□□□ -0.29
COL3A1-206ENST00000487010 DRG2P55039 364 aaKnown RBP13.23□□□□□ -0.29
COL3A1-206ENST00000487010 KLRC3Q07444 240 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 AP3B2Q13367 1082 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 DHX34Q14147 1143 aaKnown RBP13.23□□□□□ -0.29
COL3A1-206ENST00000487010 NEDD9Q14511 834 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 DRAP1Q14919 205 aaPredicted RBP13.23□□□□□ -0.29
COL3A1-206ENST00000487010 CCDC197Q8NCU1 140 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 PGM2Q96G03 612 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 ZNF317Q96PQ6 595 aaPredicted RBP13.23□□□□□ -0.29
COL3A1-206ENST00000487010 RUSC1Q9BVN2 902 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 BCAS3Q9H6U6 928 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 ERVK-5Q9HDB9 667 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 DNAJC12Q9UKB3 198 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 STK24Q9Y6E0 443 aa13.23□□□□□ -0.29
COL3A1-206ENST00000487010 GREB1LQ9C091 1923 aaPredicted RBP13.23□□□□□ -0.29
COL3A1-206ENST00000487010 CCT8L1PA6NM43 557 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 PPIP5K2O43314 1243 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 TBCAO75347 108 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 CHN1P15882 459 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ABCB4P21439 1286 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 COPB2P35606 906 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 PSMC2P35998 433 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 MMP13P45452 471 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 CLUL1Q15846 466 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 KIAA1755Q5JYT7 1200 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ADAT2Q7Z6V5 191 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 FAM186BQ8IYM0 893 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 CNBD1Q8NA66 436 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 NEK9Q8TD19 979 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 RPGRQ92834 1020 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 GLG1Q92896 1179 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 LENG9Q96B70 501 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 P2RX7Q99572 595 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 BHMT2Q9H2M3 363 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 GOPCQ9HD26 462 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 CCNL1Q9UK58 526 aaPredicted RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 TPX2Q9ULW0 747 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 MPHOSPH10O00566 681 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 KIAA0391O15091 583 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ASAP2O43150 1006 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 C21orf2O43822 256 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ATP2C2O75185 946 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 TRIM37O94972 964 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 DENND2CQ68D51 928 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ZDHHC24Q6UX98 284 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 JAMLQ86YT9 394 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 GIMAP7Q8NHV1 300 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ATXN2LQ8WWM7 1075 aaKnown RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 RNF25Q96BH1 459 aaPredicted RBP13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ARHGEF26Q96DR7 871 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 FAM20AQ96MK3 541 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 GPR88Q9GZN0 384 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ADAM7Q9H2U9 754 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 OLFML3Q9NRN5 406 aa13.22□□□□□ -0.29
COL3A1-206ENST00000487010 ZMYM2Q9UBW7 1377 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 CCDC169A6NNP5 214 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 PPP1R12BO60237 982 aaPredicted RBP13.21□□□□□ -0.29
COL3A1-206ENST00000487010 MGRN1O60291 552 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 EYA4O95677 639 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 MMEP08473 750 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 GAP43P17677 238 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 FMO5P49326 533 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 PLTPP55058 493 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 MAPK7Q13164 816 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 ZNF211Q13398 564 aaPredicted RBP13.21□□□□□ -0.29
COL3A1-206ENST00000487010 NFIL3Q16649 462 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 PIGWQ7Z7B1 504 aa13.21□□□□□ -0.29
COL3A1-206ENST00000487010 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms