RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 LINC01599Q8WXQ3 324 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 TOP1MTQ969P6 601 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 ZNF668Q96K58 619 aaPredicted RBP20.3■□□□□ 0.84
COL1A1-207ENST00000486572 NACC1Q96RE7 527 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 RAD9AQ99638 391 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 MTRQ99707 1265 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 ST3GAL5Q9UNP4 418 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 MTMR6Q9Y217 621 aa20.3■□□□□ 0.84
COL1A1-207ENST00000486572 ENPP3O14638 875 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 STX6O43752 255 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 DGAT1O75907 488 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 BMP15O95972 392 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 DARSP14868 501 aaKnown RBP20.29■□□□□ 0.84
COL1A1-207ENST00000486572 CCT6AP40227 531 aaKnown RBP20.29■□□□□ 0.84
COL1A1-207ENST00000486572 ARL6IP4Q66PJ3 421 aaKnown RBP20.29■□□□□ 0.84
COL1A1-207ENST00000486572 ZNF410Q86VK4 478 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 SNX29Q8TEQ0 813 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 TCP11Q8WWU5 503 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 PSPC1Q8WXF1 523 aaKnown RBP20.29■□□□□ 0.84
COL1A1-207ENST00000486572 TMEM143Q96AN5 459 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 GUCD1Q96NT3 240 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 TSPYL2Q9H2G4 693 aaPredicted RBP20.29■□□□□ 0.84
COL1A1-207ENST00000486572 TMX1Q9H3N1 280 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 ATP6V0A4Q9HBG4 840 aa20.29■□□□□ 0.84
COL1A1-207ENST00000486572 DBR1Q9UK59 544 aaKnown RBP20.29■□□□□ 0.84
COL1A1-207ENST00000486572 UPP2O95045 317 aa20.28■□□□□ 0.84
COL1A1-207ENST00000486572 KRT79Q5XKE5 535 aa20.28■□□□□ 0.84
COL1A1-207ENST00000486572 NLRP4Q96MN2 994 aa20.28■□□□□ 0.84
COL1A1-207ENST00000486572 GCOM2Q9BZD3 368 aaPredicted RBP20.28■□□□□ 0.84
COL1A1-207ENST00000486572 XPNPEP1Q9NQW7 623 aa20.28■□□□□ 0.84
COL1A1-207ENST00000486572 INSL6Q9Y581 213 aa20.28■□□□□ 0.84
COL1A1-207ENST00000486572 COL4A3BPQ9Y5P4 624 aa20.28■□□□□ 0.84
COL1A1-207ENST00000486572 A0A087WWV3 80 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 A0A087WZ62 844 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 LCHNA4D1U4 455 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 VWA3AA6NCI4 1184 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 PP2D1A8MPX8 630 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 HTRA4P83105 476 aaPredicted RBP20.27■□□□□ 0.84
COL1A1-207ENST00000486572 GRIN2CQ14957 1233 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 RTN4RL1Q86UN2 441 aaPredicted RBP20.27■□□□□ 0.84
COL1A1-207ENST00000486572 KSR1Q8IVT5 923 aa20.27■□□□□ 0.84
COL1A1-207ENST00000486572 PRPF31Q8WWY3 499 aaKnown RBP20.27■□□□□ 0.84
COL1A1-207ENST00000486572 CDX2Q99626 313 aaPredicted RBP20.27■□□□□ 0.84
COL1A1-207ENST00000486572 FDXACB1Q9BRP7 624 aaPredicted RBP20.27■□□□□ 0.84
COL1A1-207ENST00000486572 CHD9Q3L8U1 2897 aa20.27■□□□□ 0.83
COL1A1-207ENST00000486572 COL4A6Q14031 1691 aa20.26■□□□□ 0.83
COL1A1-207ENST00000486572 DENND3A2RUS2 1198 aa20.26■□□□□ 0.83
COL1A1-207ENST00000486572 MGEA5O60502 916 aa20.26■□□□□ 0.83
COL1A1-207ENST00000486572 USO1O60763 962 aaKnown RBP20.26■□□□□ 0.83
COL1A1-207ENST00000486572 TAP1Q03518 808 aa20.26■□□□□ 0.83
COL1A1-207ENST00000486572 SF3A1Q15459 793 aaKnown RBP20.26■□□□□ 0.83
COL1A1-207ENST00000486572 YME1L1Q96TA2 773 aa20.26■□□□□ 0.83
COL1A1-207ENST00000486572 ADAM2Q99965 735 aa20.26■□□□□ 0.83
COL1A1-207ENST00000486572 INO80BQ9C086 356 aaPredicted RBP20.26■□□□□ 0.83
COL1A1-207ENST00000486572 ZSCAN16Q9H4T2 348 aaPredicted RBP20.26■□□□□ 0.83
COL1A1-207ENST00000486572 ASAP2O43150 1006 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 ARHGEF15O94989 841 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 PDIA4P13667 645 aaKnown RBP20.25■□□□□ 0.83
COL1A1-207ENST00000486572 SFPQP23246 707 aaKnown RBP eCLIP20.25■□□□□ 0.83
COL1A1-207ENST00000486572 CDC25AP30304 524 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 LAMTOR4Q0VGL1 99 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 MXD4Q14582 209 aaPredicted RBP20.25■□□□□ 0.83
COL1A1-207ENST00000486572 ECM1Q16610 540 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 SP7Q8TDD2 431 aaPredicted RBP20.25■□□□□ 0.83
COL1A1-207ENST00000486572 RGS18Q9NS28 235 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 C1orf112Q9NSG2 853 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 DDX19AQ9NUU7 478 aaKnown RBP20.25■□□□□ 0.83
COL1A1-207ENST00000486572 KIAA1024Q9UPX6 916 aa20.25■□□□□ 0.83
COL1A1-207ENST00000486572 ARHGEF35A5YM69 484 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 FGFR4P22455 802 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 DSC3Q14574 896 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 FAM173BQ6P4H8 233 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 NPAS4Q8IUM7 802 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 MCPH1Q8NEM0 835 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 AK8Q96MA6 479 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 MMTAG2Q9BU76 263 aaKnown RBP20.24■□□□□ 0.83
COL1A1-207ENST00000486572 IFT122Q9HBG6 1241 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 STXBP5LQ9Y2K9 1186 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 TTC3P53804 2025 aa20.24■□□□□ 0.83
COL1A1-207ENST00000486572 LINC01553A4QN01 128 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 CSDE1O75534 798 aaKnown RBP20.23■□□□□ 0.83
COL1A1-207ENST00000486572 STAG3L1P0CL83 205 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 SRGAP2CP0DJJ0 459 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 ZSCAN20P17040 1043 aaPredicted RBP20.23■□□□□ 0.83
COL1A1-207ENST00000486572 SARSP49591 514 aaKnown RBP20.23■□□□□ 0.83
COL1A1-207ENST00000486572 PADI6Q6TGC4 694 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 SLC24A5Q71RS6 500 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 CRIPAKQ8N1N5 446 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 RNF149Q8NC42 400 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 SPRYD3Q8NCJ5 442 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 MYLIPQ8WY64 445 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 POLR3FQ9H1D9 316 aaPredicted RBP20.23■□□□□ 0.83
COL1A1-207ENST00000486572 BHMT2Q9H2M3 363 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 PRDM12Q9H4Q4 367 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 RNF216Q9NWF9 866 aaPredicted RBP20.23■□□□□ 0.83
COL1A1-207ENST00000486572 CLIC4Q9Y696 253 aa20.23■□□□□ 0.83
COL1A1-207ENST00000486572 C9IYK1 514 aa20.22■□□□□ 0.83
COL1A1-207ENST00000486572 ARL2P36404 184 aa20.22■□□□□ 0.83
COL1A1-207ENST00000486572 PHKA2P46019 1235 aa20.22■□□□□ 0.83
COL1A1-207ENST00000486572 TFDP1Q14186 410 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms