RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 OXSMQ9NWU1 459 aa4.83□□□□□ -1.64
VPS50-216ENST00000484954 UBA6A0AVT1 1052 aaPredicted RBP4.82□□□□□ -1.64
VPS50-216ENST00000484954 COMTP21964 271 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 RANGAP1P46060 587 aaPredicted RBP4.82□□□□□ -1.64
VPS50-216ENST00000484954 ROM1Q03395 351 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 PCBP1Q15365 356 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS50-216ENST00000484954 TCEA2Q15560 299 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 CNNM4Q6P4Q7 775 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 C16orf86Q6ZW13 317 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 UBE2R2Q712K3 238 aaPredicted RBP4.82□□□□□ -1.64
VPS50-216ENST00000484954 LRRTM3Q86VH5 581 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 ZNF575Q86XF7 245 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 HOMER1Q86YM7 354 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 SEMA4AQ9H3S1 761 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 HECAQ9UBI9 543 aaPredicted RBP4.82□□□□□ -1.64
VPS50-216ENST00000484954 PUF60Q9UHX1 559 aaKnown RBP4.82□□□□□ -1.64
VPS50-216ENST00000484954 CTDP1Q9Y5B0 961 aaPredicted RBP4.82□□□□□ -1.64
VPS50-216ENST00000484954 SLC30A1Q9Y6M5 507 aa4.82□□□□□ -1.64
VPS50-216ENST00000484954 C2orf78A6NCI8 922 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 PLSCR1O15162 318 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 ACO1P21399 889 aaKnown RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 FLT3P36888 993 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 INHBEP58166 350 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 ATP2C1P98194 919 aaPredicted RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 DSG1Q02413 1049 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 FOXL1Q12952 345 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 EPHA7Q15375 998 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 ZNF174Q15697 407 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 SEPT7Q16181 437 aaKnown RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 TTC38Q5R3I4 469 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 PRAMEF9Q5VWM5 478 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 UNQ6494/PRO21346Q6UXR6 183 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 ZNF808Q8N4W9 903 aaPredicted RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 CHTF18Q8WVB6 975 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 RTF1Q92541 710 aaKnown RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 APPBP2Q92624 585 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 NINJ1Q92982 152 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 NKD2Q969F2 451 aaPredicted RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 CHFRQ96EP1 664 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 TMEM176AQ96HP8 235 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 TUBGCP5Q96RT8 1024 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 MS4A5Q9H3V2 200 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 POFUT1Q9H488 388 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 ZMAT4Q9H898 229 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 TOMM22Q9NS69 142 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 INTS7Q9NVH2 962 aaKnown RBP4.81□□□□□ -1.64
VPS50-216ENST00000484954 SPO11Q9Y5K1 396 aa4.81□□□□□ -1.64
VPS50-216ENST00000484954 LCHNA4D1U4 455 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 SLC26A4O43511 780 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 TGM5O43548 720 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 F2P00734 622 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 CYP17A1P05093 508 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 POU3F2P20265 443 aaPredicted RBP4.8□□□□□ -1.64
VPS50-216ENST00000484954 MSX2P35548 267 aaPredicted RBP4.8□□□□□ -1.64
VPS50-216ENST00000484954 NEK4P51957 841 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 MAP3K12Q12852 859 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 SYNPOQ8N3V7 929 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 SHCBP1Q8NEM2 672 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 EXTL1Q92935 676 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 ORAI3Q9BRQ5 295 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 MYL10Q9BUA6 226 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 TARS2Q9BW92 718 aaKnown RBP4.8□□□□□ -1.64
VPS50-216ENST00000484954 THG1LQ9NWX6 298 aaKnown RBP4.8□□□□□ -1.64
VPS50-216ENST00000484954 PLA2G3Q9NZ20 509 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 SAE1Q9UBE0 346 aaPredicted RBP4.8□□□□□ -1.64
VPS50-216ENST00000484954 DENND2AQ9ULE3 1009 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 TESMINQ9Y4I5 508 aa4.8□□□□□ -1.64
VPS50-216ENST00000484954 CDC45O75419 566 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 APOL3O95236 402 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 ADCY7P51828 1080 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 ADAM8P78325 824 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 RIN1Q13671 783 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 PRKD1Q15139 912 aaPredicted RBP4.79□□□□□ -1.64
VPS50-216ENST00000484954 HS1BP3Q53T59 392 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 DALRD3Q5D0E6 543 aaKnown RBP4.79□□□□□ -1.64
VPS50-216ENST00000484954 IGFL4Q6B9Z1 124 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 KLHDC10Q6PID8 442 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 MAMDC4Q6UXC1 1216 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 KANSL1Q7Z3B3 1105 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 POLNQ7Z5Q5 900 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 NIM1KQ8IY84 436 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 EDAQ92838 391 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 E2F7Q96AV8 911 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 GPHA2Q96T91 129 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 KCMF1Q9P0J7 381 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 DNAI1Q9UI46 699 aa4.79□□□□□ -1.64
VPS50-216ENST00000484954 RBM8AQ9Y5S9 174 aaKnown RBP4.79□□□□□ -1.64
VPS50-216ENST00000484954 ELL2O00472 640 aaPredicted RBP4.78□□□□□ -1.64
VPS50-216ENST00000484954 PRPF6O94906 941 aaKnown RBP4.78□□□□□ -1.64
VPS50-216ENST00000484954 HNRNPLP14866 589 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS50-216ENST00000484954 RPS19P39019 145 aaKnown RBP4.78□□□□□ -1.64
VPS50-216ENST00000484954 SMAD3P84022 425 aaKnown RBP4.78□□□□□ -1.64
VPS50-216ENST00000484954 DGCR2P98153 550 aa4.78□□□□□ -1.64
VPS50-216ENST00000484954 GRM7Q14831 915 aa4.78□□□□□ -1.64
VPS50-216ENST00000484954 DGKDQ16760 1214 aa4.78□□□□□ -1.64
VPS50-216ENST00000484954 USP39Q53GS9 565 aaKnown RBP4.78□□□□□ -1.64
VPS50-216ENST00000484954 SPTY2D1Q68D10 685 aaPredicted RBP4.78□□□□□ -1.64
VPS50-216ENST00000484954 SMC1BQ8NDV3 1235 aa4.78□□□□□ -1.64
VPS50-216ENST00000484954 DYDC2Q96IM9 177 aa4.78□□□□□ -1.64
VPS50-216ENST00000484954 RPL10LQ96L21 214 aaKnown RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms