RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RRADP55042 308 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 ANTXR2P58335 489 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 PCOLCEQ15113 449 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 TBC1D10BQ4KMP7 808 aaPredicted RBP8.3□□□□□ -1.08
USP40-213ENST00000483216 RNF219Q5W0B1 726 aaPredicted RBP8.3□□□□□ -1.08
USP40-213ENST00000483216 HDGFL2Q7Z4V5 671 aaPredicted RBP8.3□□□□□ -1.08
USP40-213ENST00000483216 CXorf67Q86X51 503 aaPredicted RBP8.3□□□□□ -1.08
USP40-213ENST00000483216 RTKN2Q8IZC4 609 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 CLRN3Q8NCR9 226 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 WDR66Q8TBY9 1149 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 WNT8AQ9H1J5 351 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 MTG2Q9H4K7 406 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 KCNG1Q9UIX4 513 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 MCM8Q9UJA3 840 aa8.3□□□□□ -1.08
USP40-213ENST00000483216 CNOT4O95628 575 aaKnown RBP8.29□□□□□ -1.08
USP40-213ENST00000483216 MRE11P49959 708 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 SESN2P58004 480 aaPredicted RBP8.29□□□□□ -1.08
USP40-213ENST00000483216 FAPQ12884 760 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 NFYCQ13952 458 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 ZNF568Q3ZCX4 644 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 ZBTB41Q5SVQ8 909 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 AGBL4Q5VU57 503 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 LHFPL2Q6ZUX7 228 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 SPATS2Q86XZ4 545 aaKnown RBP8.29□□□□□ -1.08
USP40-213ENST00000483216 ATL2Q8NHH9 583 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 FERMT2Q96AC1 680 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 SEC61A2Q9H9S3 476 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 MYPNQ86TC9 1320 aa8.29□□□□□ -1.08
USP40-213ENST00000483216 ST20-MTHFSA0A0A6YYL1 179 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 OPHN1O60890 802 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 TMPRSS15P98073 1019 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 IQSEC1Q6DN90 963 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 LILRA6Q6PI73 481 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 KLHDC10Q6PID8 442 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 USP30Q70CQ3 517 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 FAM177A1Q8N128 213 aaPredicted RBP8.28□□□□□ -1.08
USP40-213ENST00000483216 NKD2Q969F2 451 aaPredicted RBP8.28□□□□□ -1.08
USP40-213ENST00000483216 RELTQ969Z4 430 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 DYDC2Q96IM9 177 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 KIAA1683Q9H0B3 1180 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 OR10A2Q9H208 303 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 SYNPO2Q9UMS6 1093 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 ATP8A1Q9Y2Q0 1164 aa8.28□□□□□ -1.08
USP40-213ENST00000483216 PHLDB1Q86UU1 1377 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 PRSS38A1L453 326 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 PFKMP08237 780 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 MANFP55145 182 aaKnown RBP8.27□□□□□ -1.09
USP40-213ENST00000483216 ERICH6BQ5W0A0 696 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 SLFN13Q68D06 897 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 DDX42Q86XP3 938 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP40-213ENST00000483216 GFM2Q969S9 779 aaKnown RBP8.27□□□□□ -1.09
USP40-213ENST00000483216 TOPORSQ9NS56 1045 aaPredicted RBP8.27□□□□□ -1.09
USP40-213ENST00000483216 POLR3BQ9NW08 1133 aaPredicted RBP8.27□□□□□ -1.09
USP40-213ENST00000483216 MAGEL2Q9UJ55 1249 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 NUMBLQ9Y6R0 609 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 ZNF536O15090 1300 aa8.27□□□□□ -1.09
USP40-213ENST00000483216 SHROOM4Q9ULL8 1493 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 LOC105371045A0A1W2PR82 267 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 ARHGAP6O43182 974 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 H2AFYO75367 372 aaKnown RBP8.26□□□□□ -1.09
USP40-213ENST00000483216 AMPD3Q01432 767 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 PDCD1Q15116 288 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 TBR1Q16650 682 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 RNF151Q2KHN1 245 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 LPPQ93052 612 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 HIST1H2AHQ96KK5 128 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 RBM15Q96T37 977 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP40-213ENST00000483216 HIST1H2AJQ99878 128 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 NOL10Q9BSC4 688 aaKnown RBP8.26□□□□□ -1.09
USP40-213ENST00000483216 PPP4R1LQ9P1A2 415 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 CTDP1Q9Y5B0 961 aaPredicted RBP8.26□□□□□ -1.09
USP40-213ENST00000483216 PPP2R3BQ9Y5P8 575 aa8.26□□□□□ -1.09
USP40-213ENST00000483216 PCDH8O95206 1070 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 ITGB3P05106 788 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 RSAD2Q8WXG1 361 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 WDR92Q96MX6 357 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 SSBP3Q9BWW4 388 aaPredicted RBP8.25□□□□□ -1.09
USP40-213ENST00000483216 ANO3Q9BYT9 981 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 OSBPL6Q9BZF3 934 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 MEGF9Q9H1U4 602 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 JADE2Q9NQC1 790 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 CNOT11Q9UKZ1 510 aaKnown RBP8.25□□□□□ -1.09
USP40-213ENST00000483216 TMPRSS11EQ9UL52 423 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 NR2E1Q9Y466 385 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 PCDHB6Q9Y5E3 794 aa8.25□□□□□ -1.09
USP40-213ENST00000483216 NPEPPSL1A6NEC2 478 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 FOXD2O60548 495 aaPredicted RBP8.24□□□□□ -1.09
USP40-213ENST00000483216 GPR15P49685 360 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 RAC3P60763 192 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 ADAM15Q13444 863 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 CDYL2Q8N8U2 506 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 PPP1R14CQ8TAE6 165 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 NEIL1Q96FI4 390 aaPredicted RBP8.24□□□□□ -1.09
USP40-213ENST00000483216 ACAP3Q96P50 834 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 BDH2Q9BUT1 245 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 MSL2Q9HCI7 577 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 VTA1Q9NP79 307 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 FAM184BQ9ULE4 1060 aa8.24□□□□□ -1.09
USP40-213ENST00000483216 A0A0A6YYK5 440 aaPredicted RBP8.23□□□□□ -1.09
USP40-213ENST00000483216 PRKD3O94806 890 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms