RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, human

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-213	ENST00000480658	PRDM6	Q9NQX0	595 aa		12.83	□□□□□ -0.36
CCM2-213	ENST00000480658	TTC3	P53804	2025 aa		12.83	□□□□□ -0.36
CCM2-213	ENST00000480658	SPTBN5	Q9NRC6	3674 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658		C9IYK1	514 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	ADAMTS3	O15072	1205 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	ASAP2	O43150	1006 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	SLC37A4	O43826	429 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	NEMF	O60524	1076 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	POLG	P54098	1239 aa	Predicted RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	FAM189B	P81408	668 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	TFF2	Q03403	129 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	NCBP1	Q09161	790 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	COL19A1	Q14993	1142 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	CALCRL	Q16602	461 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	TMEM266	Q2M3C6	531 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	MTERF2	Q49AM1	385 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	KRT40	Q6A162	431 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	LRRC71	Q8N4P6	559 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	NSUN7	Q8NE18	718 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	TMEM40	Q8WWA1	233 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	PSPC1	Q8WXF1	523 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	ZBTB10	Q96DT7	871 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	AIFM3	Q96NN9	605 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	POP1	Q99575	1024 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	CDCA3	Q99618	268 aa	Predicted RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	OSBPL7	Q9BZF2	842 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	ADAMTS10	Q9H324	1103 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	TMX1	Q9H3N1	280 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	CYP26B1	Q9NR63	512 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	PRKAG3	Q9UGI9	489 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	PUF60	Q9UHX1	559 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	VAV3	Q9UKW4	847 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	PCDHA12	Q9UN75	941 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	LZTS1	Q9Y250	596 aa		12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	MRPL42	Q9Y6G3	142 aa	Known RBP	12.82	□□□□□ -0.36
CCM2-213	ENST00000480658	XIRP2	A4UGR9	3374 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658		A0A0U1RQF3	1178 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	DDX11L8	A8MPP1	907 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	EDIL3	O43854	480 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	CTDNEP1	O95476	244 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	KCNA5	P22460	613 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	YWHAB	P31946	246 aa	Known RBP	12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	GNL2	Q13823	731 aa	Known RBP	12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	MXD4	Q14582	209 aa	Predicted RBP	12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	UGCG	Q16739	394 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	SPRED2	Q7Z698	418 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	RTN4RL1	Q86UN2	441 aa	Predicted RBP	12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	DIS3L2	Q8IYB7	885 aa	Known RBP	12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	CEP170P1	Q96L14	293 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	LXN	Q9BS40	222 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	PLAGL2	Q9UPG8	496 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	STK24	Q9Y6E0	443 aa		12.81	□□□□□ -0.36
CCM2-213	ENST00000480658	TBKBP1	A7MCY6	615 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	ST18	O60284	1047 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	LYPLA2	O95372	231 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	LINC00271	P0C7V0	271 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	TRAPPC10	P48553	1259 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	RBM25	P49756	843 aa	Known RBP	12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	KCNQ1	P51787	676 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	KRT17	Q04695	432 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	TFDP1	Q14186	410 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	DSC3	Q14574	896 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	PAN2	Q504Q3	1202 aa	Known RBP	12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	TCEAL5	Q5H9L2	206 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	ANO5	Q75V66	913 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	RHPN2	Q8IUC4	686 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	FAM184A	Q8NB25	1140 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	ERMN	Q8TAM6	284 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	PGBD4	Q96DM1	585 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	C8orf76	Q96K31	380 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	UIMC1	Q96RL1	719 aa		12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	FOXP1	Q9H334	677 aa	Predicted RBP	12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12.8	□□□□□ -0.36
CCM2-213	ENST00000480658	DGAT1	O75907	488 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	XRCC6	P12956	609 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	FDPS	P14324	419 aa	Known RBP	12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	HAUS3	Q68CZ6	603 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	TWF2	Q6IBS0	349 aa	Known RBP	12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	NCAPH2	Q6IBW4	605 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	SRGAP1	Q7Z6B7	1085 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	THNSL1	Q8IYQ7	743 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	NECAB1	Q8N987	351 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	CNNM3	Q8NE01	707 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	TNFRSF25	Q93038	417 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	CCDC51	Q96ER9	411 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	MTR	Q99707	1265 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	RAB34	Q9BZG1	259 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	DHX33	Q9H6R0	707 aa	Known RBP	12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	CDHR5	Q9HBB8	845 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	UBN1	Q9NPG3	1134 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	TLR9	Q9NR96	1032 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	ANKEF1	Q9NU02	776 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	CLDND1	Q9NY35	253 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	NOL7	Q9UMY1	257 aa	Known RBP	12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	COL4A3BP	Q9Y5P4	624 aa		12.79	□□□□□ -0.36
CCM2-213	ENST00000480658	PRRC2B	Q5JSZ5	2229 aa	Known RBP	12.78	□□□□□ -0.36
CCM2-213	ENST00000480658	MGEA5	O60502	916 aa		12.78	□□□□□ -0.36
CCM2-213	ENST00000480658	MUT	P22033	750 aa		12.78	□□□□□ -0.36
CCM2-213	ENST00000480658	AXL	P30530	894 aa		12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms