RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 FERMT3Q86UX7 667 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 RHPN2Q8IUC4 686 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 KSR1Q8IVT5 923 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 TMEM143Q96AN5 459 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 YME1L1Q96TA2 773 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 LRWD1Q9UFC0 647 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 COL6A3P12111 3177 aa17.4■□□□□ 0.38
HMGA1-206ENST00000478214 A0A087WZ62 844 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 LINC01553A4QN01 128 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 LAD1O00515 517 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 FOSL2P15408 326 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 SYT1P21579 422 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 FGFR4P22455 802 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 RPA1P27694 616 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 RARRES1P49788 294 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 CDC42EP1Q00587 391 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 ODR4Q5SWX8 454 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 POTEGQ6S5H5 508 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 HSCBQ8IWL3 235 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 EXOC8Q8IYI6 725 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 IGSF22Q8N9C0 903 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 PRPF31Q8WWY3 499 aaKnown RBP17.39■□□□□ 0.37
HMGA1-206ENST00000478214 NLRP4Q96MN2 994 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 CCDC43Q96MW1 224 aaKnown RBP17.39■□□□□ 0.37
HMGA1-206ENST00000478214 ADAM2Q99965 735 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 FDXACB1Q9BRP7 624 aaPredicted RBP17.39■□□□□ 0.37
HMGA1-206ENST00000478214 XPNPEP1Q9NQW7 623 aa17.39■□□□□ 0.37
HMGA1-206ENST00000478214 EPOPA6NHQ4 379 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 XRCC6P12956 609 aaKnown RBP eCLIP17.38■□□□□ 0.37
HMGA1-206ENST00000478214 IBSPP21815 317 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-206ENST00000478214 CCT6AP40227 531 aaKnown RBP17.38■□□□□ 0.37
HMGA1-206ENST00000478214 PRPHP41219 470 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 ATP2C1P98194 919 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-206ENST00000478214 ADGRE1Q14246 886 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 PDIA5Q14554 519 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 ECM1Q16610 540 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 DTHD1Q6ZMT9 781 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 BRAPQ7Z569 592 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 ZNF410Q86VK4 478 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 SP7Q8TDD2 431 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-206ENST00000478214 ARNTL2Q8WYA1 636 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 NACC1Q96RE7 527 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 MTRQ99707 1265 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 GCOM2Q9BZD3 368 aaPredicted RBP17.38■□□□□ 0.37
HMGA1-206ENST00000478214 COL4A3BPQ9Y5P4 624 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 MYO9BQ13459 2157 aa17.38■□□□□ 0.37
HMGA1-206ENST00000478214 DENND3A2RUS2 1198 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 PP2D1A8MPX8 630 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 RFXAPO00287 272 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 GAS2O43903 313 aaKnown RBP17.37■□□□□ 0.37
HMGA1-206ENST00000478214 DGAT1O75907 488 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 DSC3Q14574 896 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 HAUS3Q68CZ6 603 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 CRIPAKQ8N1N5 446 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 PSPC1Q8WXF1 523 aaKnown RBP17.37■□□□□ 0.37
HMGA1-206ENST00000478214 RAB34Q9BZG1 259 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 RGS18Q9NS28 235 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 LOXHD1Q8IVV2 1947 aa17.37■□□□□ 0.37
HMGA1-206ENST00000478214 USO1O60763 962 aaKnown RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 SRGAP2CP0DJJ0 459 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 CDC25AP30304 524 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 SARSP49591 514 aaKnown RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 LAMTOR4Q0VGL1 99 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 RESTQ13127 1097 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 FAM43BQ6ZT52 329 aaPredicted RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 NPAS4Q8IUM7 802 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 SNX29Q8TEQ0 813 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 TCP11Q8WWU5 503 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 TGS1Q96RS0 853 aaKnown RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 GAS2L1Q99501 681 aaPredicted RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 RC3H2Q9HBD1 1191 aaKnown RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 ATP6V0A4Q9HBG4 840 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 DBR1Q9UK59 544 aaKnown RBP17.36■□□□□ 0.37
HMGA1-206ENST00000478214 MTUS1Q9ULD2 1270 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 MTMR6Q9Y217 621 aa17.36■□□□□ 0.37
HMGA1-206ENST00000478214 TTC3P53804 2025 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 C9IYK1 514 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 DGKIO75912 1065 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 MUTP22033 750 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 ERVK-21P61565 698 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 SLC24A5Q71RS6 500 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 C17orf80Q9BSJ5 609 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 IFT122Q9HBG6 1241 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 C1orf112Q9NSG2 853 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 KIAA1024Q9UPX6 916 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 STK24Q9Y6E0 443 aa17.35■□□□□ 0.37
HMGA1-206ENST00000478214 VWA3AA6NCI4 1184 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 STX6O43752 255 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 STAG3L1P0CL83 205 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 ZSCAN20P17040 1043 aaPredicted RBP17.34■□□□□ 0.37
HMGA1-206ENST00000478214 IGFBP4P22692 258 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 SFPQP23246 707 aaKnown RBP eCLIP17.34■□□□□ 0.37
HMGA1-206ENST00000478214 ARL2P36404 184 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 GATMP50440 423 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 FAM189BP81408 668 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 KRT79Q5XKE5 535 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 ARL6IP4Q66PJ3 421 aaKnown RBP17.34■□□□□ 0.37
HMGA1-206ENST00000478214 FAM173BQ6P4H8 233 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 MAEAQ7L5Y9 396 aa17.34■□□□□ 0.37
HMGA1-206ENST00000478214 ADGRA3Q8IWK6 1321 aa17.34■□□□□ 0.37
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