RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TRAF1Q13077 416 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 PGM5Q15124 567 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 UTP14CQ5TAP6 766 aaKnown RBP9.31□□□□□ -0.92
USP54-211ENST00000474929 CEP68Q76N32 757 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 DDX53Q86TM3 631 aaKnown RBP9.31□□□□□ -0.92
USP54-211ENST00000474929 HDAC7Q8WUI4 952 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 KIF1BPQ96EK5 621 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 SENP7Q9BQF6 1050 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 FAM49AQ9H0Q0 323 aaPredicted RBP9.31□□□□□ -0.92
USP54-211ENST00000474929 NAPBQ9H115 298 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 CHRDQ9H2X0 955 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 TMX1Q9H3N1 280 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 HCSTQ9UBK5 93 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 MSRB2Q9Y3D2 182 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 PCDHA1Q9Y5I3 950 aa9.31□□□□□ -0.92
USP54-211ENST00000474929 RBAK-RBAKDNI3L0D1 243 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 TK2O00142 265 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 MAN2B1O00754 1011 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 INPPL1O15357 1258 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 GPAA1O43292 621 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 C1RP00736 705 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 ADH1AP07327 375 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 SNHG28P0DPA3 235 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 TARSP26639 723 aaKnown RBP9.3□□□□□ -0.92
USP54-211ENST00000474929 RDXP35241 583 aaKnown RBP9.3□□□□□ -0.92
USP54-211ENST00000474929 GPC5P78333 572 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 SP2Q02086 613 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 MTAPQ13126 283 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 RNF43Q68DV7 783 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 KANK3Q6NY19 840 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 PPP4R3CPQ6ZMV5 832 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 TPRG1Q6ZUI0 275 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 STOX1Q6ZVD7 989 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 CYFIP1Q7L576 1253 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 GET4Q7L5D6 327 aaPredicted RBP9.3□□□□□ -0.92
USP54-211ENST00000474929 LONP2Q86WA8 852 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 IFNL3Q8IZI9 196 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 ZNF710Q8N1W2 664 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 RHPN1Q8TCX5 695 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 PIK3R5Q8WYR1 880 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 SMG7Q92540 1137 aaKnown RBP9.3□□□□□ -0.92
USP54-211ENST00000474929 CASD1Q96PB1 797 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 BOLA2Q9H3K6 86 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 PIDD1Q9HB75 910 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 MAN1C1Q9NR34 630 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 IL17RBQ9NRM6 502 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 ZDHHC7Q9NXF8 308 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 MYH15Q9Y2K3 1946 aa9.3□□□□□ -0.92
USP54-211ENST00000474929 SPTA1P02549 2419 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 CCDC195A0A1B0GUA6 201 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 SMIM35A0A1B0GVV1 85 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 PATL2C9JE40 543 aaKnown RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 RANBP6O60518 1105 aaKnown RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 EPN2O95208 641 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 CSRP1P21291 193 aaKnown RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 TCF7P36402 384 aaPredicted RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 PBX3P40426 434 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 METAP2P50579 478 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP54-211ENST00000474929 FAM189BP81408 668 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 SLFN5Q08AF3 891 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 SLFNL1Q499Z3 407 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 FAM160A2Q8N612 972 aaPredicted RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 INPP4AQ96PE3 977 aaPredicted RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 SMARCAD1Q9H4L7 1026 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 IL1RAPL2Q9NP60 686 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 VPS45Q9NRW7 570 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP54-211ENST00000474929 SUPT16HQ9Y5B9 1047 aaKnown RBP9.29□□□□□ -0.92
USP54-211ENST00000474929 PCDHA2Q9Y5H9 948 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 DMXL2Q8TDJ6 3036 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 WDFY3Q8IZQ1 3526 aa9.29□□□□□ -0.92
USP54-211ENST00000474929 CAPN8A6NHC0 703 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 H0Y626 953 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 MGEA5O60502 916 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 PAPSS2O95340 614 aaPredicted RBP9.28□□□□□ -0.92
USP54-211ENST00000474929 TRIM16O95361 564 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 PAPLNO95428 1278 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 GLUD1P00367 558 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 ZSCAN20P17040 1043 aaPredicted RBP9.28□□□□□ -0.92
USP54-211ENST00000474929 CXCL12P48061 93 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 BCAR1P56945 870 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 SF3A2Q15428 464 aaKnown RBP9.28□□□□□ -0.92
USP54-211ENST00000474929 CCDC184Q52MB2 194 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 MARCH8Q5T0T0 291 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 LRRC55Q6ZSA7 311 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 DNASE1L2Q92874 299 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 CDHR1Q96JP9 859 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 TTC14Q96N46 770 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 TMEM47Q9BQJ4 181 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 PLEKHA4Q9H4M7 779 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 MRPL17Q9NRX2 175 aaKnown RBP9.28□□□□□ -0.92
USP54-211ENST00000474929 TCP11L1Q9NUJ3 509 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 EXOC6BQ9Y2D4 811 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 MTF2Q9Y483 593 aaPredicted RBP9.28□□□□□ -0.92
USP54-211ENST00000474929 MYH6P13533 1939 aa9.28□□□□□ -0.92
USP54-211ENST00000474929 SPATA31C2B4DYI2 1134 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 ORC4O43929 436 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 NMT2O60551 498 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 SEC24BO95487 1268 aa9.27□□□□□ -0.93
USP54-211ENST00000474929 TRIM27P14373 513 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms