RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SLC7A14Q8TBB6 771 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 LENG9Q96B70 501 aa5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 RPL10LQ96L21 214 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 CELF4Q9BZC1 486 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 MRPS23Q9Y3D9 190 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-212ENST00000474059 UBE2QL1A1L167 161 aa5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 PTTG1IPP53801 180 aa5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 ELAVL1Q15717 326 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 PRIMA1Q86XR5 153 aa5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 SLC7A6OSQ96CW6 309 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 CDC6Q99741 560 aa5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 FOXB1Q99853 325 aa5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 DHRS4Q9BTZ2 278 aa5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 RBM8AQ9Y5S9 174 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-212ENST00000474059 TMEM191CA6NGB0 347 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 DVL2O14641 736 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 GSTA4O15217 222 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 LMNAP02545 664 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 RGS3P49796 1198 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 BPIFB4P59827 614 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 SSRP1Q08945 709 aaKnown RBP5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 CCDC142Q17RM4 750 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 FAM111BQ6SJ93 734 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 EP400NLQ6ZTU2 488 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 OR5AN1Q8NGI8 311 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 LPPQ93052 612 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 GPR87Q9BY21 358 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 HS3ST4Q9Y661 456 aa5.45□□□□□ -1.54
CCDC88A-212ENST00000474059 GCP02774 474 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 NAT1P18440 290 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 TCIRG1Q13488 830 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 CNGB1Q14028 1251 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 TMEM132BQ14DG7 1078 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 TRIM61Q5EBN2 209 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 CLEC14AQ86T13 490 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 ELOA2Q8IYF1 753 aaPredicted RBP5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 HAPLN2Q9GZV7 340 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 IL23AQ9NPF7 189 aa5.44□□□□□ -1.54
CCDC88A-212ENST00000474059 PRLP01236 227 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 MTERF2Q49AM1 385 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 RABL3Q5HYI8 236 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 COLEC12Q5KU26 742 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 OTOP1Q7RTM1 612 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 CXorf67Q86X51 503 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 WDR48Q8TAF3 677 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 CALML6Q8TD86 181 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 SLC25A43Q8WUT9 341 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 HAS1Q92839 578 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 ERCC4Q92889 916 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 ZNF764Q96H86 408 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 MNTQ99583 582 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 CCDC113Q9H0I3 377 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 PRDM13Q9H4Q3 707 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 DENND2AQ9ULE3 1009 aa5.43□□□□□ -1.54
CCDC88A-212ENST00000474059 SLC12A8A0AV02 714 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 STC2O76061 302 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 MECP2P51608 486 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 MAP3K12Q12852 859 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 NAIF1Q69YI7 327 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 FGD2Q7Z6J4 655 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 ZNF276Q8N554 614 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 PGBD4Q96DM1 585 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 BBC3Q96PG8 261 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 SYNPO2LQ9H987 977 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 SAE1Q9UBE0 346 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 NDOR1Q9UHB4 597 aa5.42□□□□□ -1.54
CCDC88A-212ENST00000474059 TCRBV16S1A1N1A0A5B0 115 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 H2AFYO75367 372 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 VSIG10L2P0DP72 767 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 PTGS2P35354 604 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 SESN2P58004 480 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 IRF9Q00978 393 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 GAGE13Q4V321 117 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 TMEM177Q53S58 311 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 FKBP15Q5T1M5 1219 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 CC2D1AQ6P1N0 951 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 MDGA1Q8NFP4 955 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 GFM2Q969S9 779 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 TCF25Q9BQ70 676 aa5.41□□□□□ -1.54
CCDC88A-212ENST00000474059 TOX4O94842 621 aa5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 SLC6A3Q01959 620 aa5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 LONRF2Q1L5Z9 754 aa5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 MB21D1Q8N884 522 aa5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 GCDHQ92947 438 aaPredicted RBP5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 TRIM55Q9BYV6 548 aa5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 FZD1Q9UP38 647 aa5.4□□□□□ -1.54
CCDC88A-212ENST00000474059 COL4A3Q01955 1670 aa5.4□□□□□ -1.55
CCDC88A-212ENST00000474059 KCNQ2O43526 872 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 NUDT3O95989 172 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 CFBP00751 764 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 SMAD3P84022 425 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 ZNF662Q6ZS27 426 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 LRRC55Q6ZSA7 311 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 LRP10Q7Z4F1 713 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 BRAPQ7Z569 592 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 GSPT2Q8IYD1 628 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 IGSF22Q8N9C0 903 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 PLA2G15Q8NCC3 412 aa5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 ATXN2LQ8WWM7 1075 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-212ENST00000474059 ZNF512Q96ME7 567 aaPredicted RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms