RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 MYEOVQ96EZ4 313 aa3.48□□□□□ -1.85
CCDC39-203ENST00000473854 UCKL1Q9NWZ5 548 aa3.48□□□□□ -1.85
CCDC39-203ENST00000473854 SAE1Q9UBE0 346 aaPredicted RBP3.48□□□□□ -1.85
CCDC39-203ENST00000473854 FRMD4BQ9Y2L6 1034 aa3.48□□□□□ -1.85
CCDC39-203ENST00000473854 SETD1BQ9UPS6 1966 aaKnown RBP3.48□□□□□ -1.85
CCDC39-203ENST00000473854 A0A1W2PQU0 124 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 TCRBV5S4A2TA0A5A2 114 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 UBE2QL1A1L167 161 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 MAN2B1O00754 1011 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 SMAD7O15105 426 aaKnown RBP3.47□□□□□ -1.85
CCDC39-203ENST00000473854 ZFPL1O95159 310 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 FGFR1P11362 822 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 ZEB1P37275 1124 aaPredicted RBP3.47□□□□□ -1.85
CCDC39-203ENST00000473854 TCIRG1Q13488 830 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 KRTAP5-4Q6L8H1 288 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 KRTAP5-1Q6L8H4 278 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 LRSAM1Q6UWE0 723 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 MB21D1Q8N884 522 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 BOLLQ8N9W6 283 aaKnown RBP3.47□□□□□ -1.85
CCDC39-203ENST00000473854 C9orf106Q8NAJ2 232 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 ST8SIA2Q92186 375 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 FBXW5Q969U6 566 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 RPL10LQ96L21 214 aaKnown RBP3.47□□□□□ -1.85
CCDC39-203ENST00000473854 GPHA2Q96T91 129 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 AARSD1Q9BTE6 412 aaKnown RBP3.47□□□□□ -1.85
CCDC39-203ENST00000473854 SLC46A2Q9BY10 475 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 CATSPERZQ9NTU4 200 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 SORCS3Q9UPU3 1222 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 ASB1Q9Y576 335 aa3.47□□□□□ -1.85
CCDC39-203ENST00000473854 POLR2AP24928 1970 aaKnown RBP3.47□□□□□ -1.85
CCDC39-203ENST00000473854 B2RBV5 119 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 AQP7O14520 342 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 SCAF4O95104 1147 aaKnown RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 JUNP05412 331 aaKnown RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 VSIG10L2P0DP72 767 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 STAT3P40763 770 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 KRTAP10-6P60371 365 aaPredicted RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 IFRD2Q12894 506 aaPredicted RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 CRY1Q16526 586 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 KRT40Q6A162 431 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 APBB1IPQ7Z5R6 666 aaPredicted RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 ELOA2Q8IYF1 753 aaPredicted RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 HIPK4Q8NE63 616 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 CAVIN3Q969G5 261 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 SERHL2Q9H4I8 314 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 DENND2AQ9ULE3 1009 aa3.46□□□□□ -1.86
CCDC39-203ENST00000473854 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 RBM8AQ9Y5S9 174 aaKnown RBP3.46□□□□□ -1.86
CCDC39-203ENST00000473854 COL11A2P13942 1736 aaPredicted RBP3.45□□□□□ -1.86
CCDC39-203ENST00000473854 CENPVL1A0A0U1RR11 272 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 HKR1P10072 659 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 TYRP1P17643 537 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 CXCR5P32302 372 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 FAM47CQ5HY64 1035 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 METTL24Q5JXM2 366 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 C1QL3Q5VWW1 255 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 MRM1Q6IN84 353 aaKnown RBP3.45□□□□□ -1.86
CCDC39-203ENST00000473854 C16orf59Q7L2K0 433 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 MTDHQ86UE4 582 aaKnown RBP3.45□□□□□ -1.86
CCDC39-203ENST00000473854 PTRH1Q86Y79 214 aaKnown RBP3.45□□□□□ -1.86
CCDC39-203ENST00000473854 ZNF512Q96ME7 567 aaPredicted RBP3.45□□□□□ -1.86
CCDC39-203ENST00000473854 PRDM13Q9H4Q3 707 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 RNF7Q9UBF6 113 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 TESQ9UGI8 421 aaKnown RBP3.45□□□□□ -1.86
CCDC39-203ENST00000473854 SFMBT1Q9UHJ3 866 aa3.45□□□□□ -1.86
CCDC39-203ENST00000473854 GAGE12BA1L429 117 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 GAGE12HA6NDE8 117 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 PRODHO43272 600 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 APPP05067 770 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 MMEP08473 750 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 PABPC1P11940 636 aaKnown RBP3.44□□□□□ -1.86
CCDC39-203ENST00000473854 ZNF16P17020 682 aaPredicted RBP3.44□□□□□ -1.86
CCDC39-203ENST00000473854 KRT15P19012 456 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 NPEPPSP55786 919 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 ADAM8P78325 824 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 NHLH1Q02575 133 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 FOXF2Q12947 444 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 NTRK3Q16288 839 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 DDB1Q16531 1140 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 GPR162Q16538 588 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 CCDC62Q6P9F0 684 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 NSMFQ6X4W1 530 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 ARHGEF19Q8IW93 802 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 SRRM1Q8IYB3 904 aaKnown RBP3.44□□□□□ -1.86
CCDC39-203ENST00000473854 ZNF366Q8N895 744 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 CAGE1Q8TC20 777 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 ASB15Q8WXK1 588 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 ANKS1AQ92625 1134 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 SYBUQ9NX95 663 aa3.44□□□□□ -1.86
CCDC39-203ENST00000473854 EIF2B4Q9UI10 523 aaKnown RBP3.44□□□□□ -1.86
CCDC39-203ENST00000473854 PRAMEF22A3QJZ6 481 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 C2orf78A6NCI8 922 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 TMEM200CA6NKL6 621 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 RNASET2O00584 256 aaKnown RBP3.43□□□□□ -1.86
CCDC39-203ENST00000473854 ZNF185O15231 689 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 FOXP2O15409 715 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 AMY2AP04746 511 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 AMY2BP19961 511 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 SPIDRQ14159 915 aa3.43□□□□□ -1.86
CCDC39-203ENST00000473854 DGKDQ16760 1214 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms