RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 TBKBP1A7MCY6 615 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 CCNT1O60563 726 aaKnown RBP18.76■□□□□ 0.59
USP40-212ENST00000473191 MMP1P03956 469 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 NEK4P51957 841 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 FAM189BP81408 668 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 TBC1D8BQ0IIM8 1120 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 COL19A1Q14993 1142 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 KSR1Q8IVT5 923 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 NSUN7Q8NE18 718 aaKnown RBP18.76■□□□□ 0.59
USP40-212ENST00000473191 PABPC5Q96DU9 382 aaKnown RBP18.76■□□□□ 0.59
USP40-212ENST00000473191 MAP7D2Q96T17 732 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 EPHX3Q9H6B9 360 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 CLDND1Q9NY35 253 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 RWDD3Q9Y3V2 267 aa18.76■□□□□ 0.59
USP40-212ENST00000473191 IGKV6-21A0A0C4DH24 114 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 DDX11L8A8MPP1 907 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 EIF4BP23588 611 aaKnown RBP18.75■□□□□ 0.59
USP40-212ENST00000473191 NPEPPSP55786 919 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 PPP2R5CQ13362 524 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 PPP4R3AQ6IN85 833 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 LRRC55Q6ZSA7 311 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 FAM177A1Q8N128 213 aaPredicted RBP18.75■□□□□ 0.59
USP40-212ENST00000473191 RDM1Q8NG50 284 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 PLVAPQ9BX97 442 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 IGFLR1Q9H665 355 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 C1orf112Q9NSG2 853 aa18.75■□□□□ 0.59
USP40-212ENST00000473191 TYW1Q9NV66 732 aaKnown RBP18.75■□□□□ 0.59
USP40-212ENST00000473191 ZBTB39O15060 712 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 DARSP14868 501 aaKnown RBP18.74■□□□□ 0.59
USP40-212ENST00000473191 TMOD1P28289 359 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 ANKRD1Q15327 319 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 CLUL1Q15846 466 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 XKR3Q5GH77 459 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 PTCRAQ6ISU1 281 aaPredicted RBP18.74■□□□□ 0.59
USP40-212ENST00000473191 POF1BQ8WVV4 589 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 P2RX5Q93086 422 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 LMAN2LQ9H0V9 348 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 CWH43Q9H720 699 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 BMP2KQ9NSY1 1161 aaPredicted RBP18.74■□□□□ 0.59
USP40-212ENST00000473191 RGL1Q9NZL6 768 aa18.74■□□□□ 0.59
USP40-212ENST00000473191 A0A087WZ62 844 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 GRXCR2A6NFK2 248 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 TBX10O75333 385 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 PBX3P40426 434 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 PSMC5P62195 406 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 SPIRE1Q08AE8 756 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 CTC1Q2NKJ3 1217 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 NLRP7Q8WX94 980 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 CASD1Q96PB1 797 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 FDXACB1Q9BRP7 624 aaPredicted RBP18.73■□□□□ 0.59
USP40-212ENST00000473191 TMEM161AQ9NX61 479 aa18.73■□□□□ 0.59
USP40-212ENST00000473191 BTBD18B2RXH4 712 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 MAFO75444 373 aaPredicted RBP18.72■□□□□ 0.59
USP40-212ENST00000473191 ATF7P17544 494 aaPredicted RBP18.72■□□□□ 0.59
USP40-212ENST00000473191 XBP1P17861 261 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 KRT2P35908 639 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 RBM10P98175 930 aaKnown RBP18.72■□□□□ 0.59
USP40-212ENST00000473191 SPOUT1Q5T280 376 aaKnown RBP18.72■□□□□ 0.59
USP40-212ENST00000473191 ECHDC2Q86YB7 292 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 FAM178BQ8IXR5 827 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 FAM20AQ96MK3 541 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 SCLT1Q96NL6 688 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 ATP6V0A4Q9HBG4 840 aa18.72■□□□□ 0.59
USP40-212ENST00000473191 C5orf42Q9H799 3197 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 QARSP47897 775 aaKnown RBP18.71■□□□□ 0.59
USP40-212ENST00000473191 CTTNQ14247 550 aaKnown RBP18.71■□□□□ 0.59
USP40-212ENST00000473191 CLLU1OSQ5K130 101 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 ODR4Q5SWX8 454 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 NCAPH2Q6IBW4 605 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 RBM23Q86U06 439 aaKnown RBP18.71■□□□□ 0.59
USP40-212ENST00000473191 RHPN2Q8IUC4 686 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 COLGALT1Q8NBJ5 622 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 RNF169Q8NCN4 708 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 DYDC2Q96IM9 177 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 ELAC1Q9H777 363 aaKnown RBP18.71■□□□□ 0.59
USP40-212ENST00000473191 CYP26B1Q9NR63 512 aa18.71■□□□□ 0.59
USP40-212ENST00000473191 SUCLA2Q9P2R7 463 aaPredicted RBP18.71■□□□□ 0.59
USP40-212ENST00000473191 MEIS3P2A8K0S8 358 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 GCFC2P16383 781 aaKnown RBP18.7■□□□□ 0.58
USP40-212ENST00000473191 ZSCAN20P17040 1043 aaPredicted RBP18.7■□□□□ 0.58
USP40-212ENST00000473191 ERVFC1P60507 584 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 GUCY1B3Q02153 619 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 CYP4A11Q02928 519 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 LONRF3Q496Y0 759 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 ZNF598Q86UK7 904 aaKnown RBP18.7■□□□□ 0.58
USP40-212ENST00000473191 NLRP4Q96MN2 994 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 KIF2CQ99661 725 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 LXNQ9BS40 222 aa18.7■□□□□ 0.58
USP40-212ENST00000473191 A0A087WWV3 80 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 PER2O15055 1255 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 FGF18O76093 207 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 GLP2RO95838 553 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 P4HBP07237 508 aaKnown RBP18.69■□□□□ 0.58
USP40-212ENST00000473191 ADAM15Q13444 863 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 EPHA7Q15375 998 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 NAALADL2Q58DX5 795 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 DIS3L2Q8IYB7 885 aaKnown RBP18.69■□□□□ 0.58
USP40-212ENST00000473191 WASF1Q92558 559 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 LPPQ93052 612 aa18.69■□□□□ 0.58
USP40-212ENST00000473191 TMEM143Q96AN5 459 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms