RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 PRDM5Q9NQX1 630 aaPredicted RBP9.33□□□□□ -0.92
HPS4-209ENST00000466781 FBXO40Q9UH90 709 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 SUN2Q9UH99 717 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 SFMBT1Q9UHJ3 866 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 LRRC7Q96NW7 1537 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 DEPDC5O75140 1603 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 GH2P01242 217 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 CYP2D6P10635 497 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 HOXA13P31271 388 aaPredicted RBP9.33□□□□□ -0.92
HPS4-209ENST00000466781 IFNAR2P48551 515 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 ACCSLQ4AC99 568 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 RAB42Q8N4Z0 105 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 ANKRD13CQ8N6S4 541 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 EXOC4Q96A65 974 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 KLC2Q9H0B6 622 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 EMILIN3Q9NT22 766 aa9.33□□□□□ -0.92
HPS4-209ENST00000466781 G3BP2Q9UN86 482 aaKnown RBP9.33□□□□□ -0.92
HPS4-209ENST00000466781 BCORL1Q5H9F3 1711 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 MYL1P05976 194 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 TRIP13Q15645 432 aaPredicted RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 DCAF4L1Q3SXM0 396 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SH3KBP1Q96B97 665 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 NRBF2Q96F24 287 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 CHAMP1Q96JM3 812 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SRPK1Q96SB4 655 aaKnown RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 GINM1Q9NU53 330 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 KCNH4Q9UQ05 1017 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 KIF20BQ96Q89 1820 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 PPLO60437 1756 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 FAM196BA6NMK8 535 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SERPING1P05155 500 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 GPC3P51654 580 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 PLTPP55058 493 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 KCNA1Q09470 495 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SLC10A5Q5PT55 438 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SMAP1Q8IYB5 467 aaPredicted RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 RNF168Q8IYW5 571 aaPredicted RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 RASEFQ8IZ41 740 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 OSBP2Q969R2 916 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 UPF3AQ9H1J1 476 aaKnown RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 LMBRD1Q9NUN5 540 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 KLHL8Q9P2G9 620 aaPredicted RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 KIF1AQ12756 1690 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 RASGRF2O14827 1237 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 CAMTA2O94983 1202 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SCARF1Q14162 830 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 EPHA10Q5JZY3 1008 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 CENPUQ71F23 418 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 TEX2Q8IWB9 1127 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 RMDN2Q96LZ7 410 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 COG4Q9H9E3 785 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 ELP3Q9H9T3 547 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 LCMT1Q9UIC8 334 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 E5RI56 91 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 CFLARO15519 480 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 HSPA4LO95757 839 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 MCAMP43121 646 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SCG3Q8WXD2 468 aaKnown RBP9.32□□□□□ -0.92
HPS4-209ENST00000466781 ATP8A1Q9Y2Q0 1164 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 EXOC1LA0A1B0GW35 172 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 SYNDIG1LA6NDD5 238 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 EFCAB14O75071 495 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 PEX3P56589 373 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 LCA5Q86VQ0 697 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 MED4Q9NPJ6 270 aa9.32□□□□□ -0.92
HPS4-209ENST00000466781 TRPA1O75762 1119 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 EEF1DP29692 281 aaKnown RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 FKBP3Q00688 224 aaKnown RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 RBL2Q08999 1139 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 C2orf54Q08AI8 447 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ZKSCAN8Q15776 578 aaPredicted RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 BBS9Q3SYG4 887 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 FAM83BQ5T0W9 1011 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 TBC1D16Q8TBP0 767 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 RAET1EQ8TD07 263 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 KIFC3Q9BVG8 833 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 TRAIPQ9BWF2 469 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 MAGEB5Q9BZ81 275 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 TRIM4Q9C037 500 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 THAP9Q9H5L6 903 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 SP110Q9HB58 689 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 PRPF4O43172 522 aaKnown RBP eCLIP9.31□□□□□ -0.92
HPS4-209ENST00000466781 BRD1O95696 1058 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 MTMR1Q13613 665 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ANKS3Q6ZW76 656 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 THNSL1Q8IYQ7 743 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 PYROXD1Q8WU10 500 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ACAP3Q96P50 834 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 USP17L10C9JJH3 530 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 TJP3O95049 919 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 EPHB4P54760 987 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 LBRQ14739 615 aaKnown RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 ZNF699Q32M78 642 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 ZNF568Q3ZCX4 644 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 KRT39Q6A163 491 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 KRT80Q6KB66 452 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 CC2D1AQ6P1N0 951 aaPredicted RBP9.31□□□□□ -0.92
HPS4-209ENST00000466781 LRRC8AQ8IWT6 810 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 BCAS4Q8TDM0 211 aa9.31□□□□□ -0.92
HPS4-209ENST00000466781 MAML1Q92585 1016 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms