RNA–Protein interactions for RNA: ENST00000465505.2

SNX4-202, Transcript of sorting nexin 4, humanhuman

TSL 5

Gene SNX4, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-202ENST00000465505 TRIM39Q9HCM9 518 aa4.32□□□□□ -1.72
SNX4-202ENST00000465505 SFMBT1Q9UHJ3 866 aa4.32□□□□□ -1.72
SNX4-202ENST00000465505 VWA7Q9Y334 891 aa4.32□□□□□ -1.72
SNX4-202ENST00000465505 KRTAP23-1A1A580 65 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 APPP05067 770 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 MCM7P33993 719 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 ATP2C1P98194 919 aaPredicted RBP4.31□□□□□ -1.72
SNX4-202ENST00000465505 IRF9Q00978 393 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 HHEXQ03014 270 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 ADAM15Q13444 863 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 RIN1Q13671 783 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 TUBA3CQ13748 450 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 SAFB2Q14151 953 aaKnown RBP eCLIP4.31□□□□□ -1.72
SNX4-202ENST00000465505 ACAP1Q15027 740 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 CC2D1AQ6P1N0 951 aaPredicted RBP4.31□□□□□ -1.72
SNX4-202ENST00000465505 TUBA3EQ6PEY2 450 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 ANKRD13AQ8IZ07 590 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 THEMISQ8N1K5 641 aaPredicted RBP4.31□□□□□ -1.72
SNX4-202ENST00000465505 D2HGDHQ8N465 521 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 ZSWIM2Q8NEG5 633 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 RABGGTAQ92696 567 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 ERCC4Q92889 916 aaPredicted RBP4.31□□□□□ -1.72
SNX4-202ENST00000465505 MKL1Q969V6 931 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 CHFRQ96EP1 664 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 TMEM176AQ96HP8 235 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 C8orf37Q96NL8 207 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 TRIM8Q9BZR9 551 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 AURKAIP1Q9NWT8 199 aaPredicted RBP4.31□□□□□ -1.72
SNX4-202ENST00000465505 CEP72Q9P209 647 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 KCNG1Q9UIX4 513 aa4.31□□□□□ -1.72
SNX4-202ENST00000465505 C2orf78A6NCI8 922 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 HIP1RO75146 1068 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 STAT3P40763 770 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 MECP2P51608 486 aaKnown RBP4.3□□□□□ -1.72
SNX4-202ENST00000465505 ANTXR2P58335 489 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 PURAQ00577 322 aaKnown RBP4.3□□□□□ -1.72
SNX4-202ENST00000465505 MAP3K12Q12852 859 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 TMPRSS6Q8IU80 811 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 TMTC2Q8N394 836 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 THAP3Q8WTV1 239 aaPredicted RBP4.3□□□□□ -1.72
SNX4-202ENST00000465505 LPPQ93052 612 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 SRPK1Q96SB4 655 aaKnown RBP4.3□□□□□ -1.72
SNX4-202ENST00000465505 MPHOSPH9Q99550 1183 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 FOXB1Q99853 325 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 BOCQ9BWV1 1114 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 IKZF4Q9H2S9 585 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 MAGEL2Q9UJ55 1249 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 GIT1Q9Y2X7 761 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 SH3BP1Q9Y3L3 701 aa4.3□□□□□ -1.72
SNX4-202ENST00000465505 WDR33Q9C0J8 1336 aaKnown RBP4.29□□□□□ -1.72
SNX4-202ENST00000465505 CAPN14A8MX76 684 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 DVL2O14641 736 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 RGS3P49796 1198 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 MMP14P50281 582 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 RRP1BQ14684 758 aaKnown RBP4.29□□□□□ -1.72
SNX4-202ENST00000465505 ARHGAP44Q17R89 818 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 KLHDC10Q6PID8 442 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 LILRB2Q8N423 598 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 CEP89Q96ST8 783 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 SLC6A15Q9H2J7 730 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 MMRN2Q9H8L6 949 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 NCOA5Q9HCD5 579 aaKnown RBP4.29□□□□□ -1.72
SNX4-202ENST00000465505 C11orf21Q9P2W6 132 aa4.29□□□□□ -1.72
SNX4-202ENST00000465505 SAE1Q9UBE0 346 aaPredicted RBP4.29□□□□□ -1.72
SNX4-202ENST00000465505 LAS1LQ9Y4W2 734 aaKnown RBP4.29□□□□□ -1.72
SNX4-202ENST00000465505 A0A1W2PRX2 142 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 CYP27B1O15528 508 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 H2AFYO75367 372 aaKnown RBP4.28□□□□□ -1.72
SNX4-202ENST00000465505 FNTBP49356 437 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 SESN2P58004 480 aaPredicted RBP4.28□□□□□ -1.72
SNX4-202ENST00000465505 ADAM8P78325 824 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 C2orf27AQ580R0 203 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 NEU4Q8WWR8 484 aaPredicted RBP4.28□□□□□ -1.72
SNX4-202ENST00000465505 LARP4BQ92615 738 aaKnown RBP4.28□□□□□ -1.72
SNX4-202ENST00000465505 NKD2Q969F2 451 aaPredicted RBP4.28□□□□□ -1.72
SNX4-202ENST00000465505 GFM2Q969S9 779 aaKnown RBP4.28□□□□□ -1.72
SNX4-202ENST00000465505 MAML3Q96JK9 1138 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 CLUHP3Q96NS8 147 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 GPHA2Q96T91 129 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 DENND2AQ9ULE3 1009 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 PTCH2Q9Y6C5 1203 aa4.28□□□□□ -1.72
SNX4-202ENST00000465505 M0R2C6 588 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 PLD2O14939 933 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 CLGNO14967 610 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 KRT37O76014 449 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 PRLP01236 227 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 MAKP20794 623 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 KIF11P52732 1056 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 SLC6A3Q01959 620 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 ROM1Q03395 351 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 SMN1Q16637 294 aaKnown RBP4.27□□□□□ -1.73
SNX4-202ENST00000465505 SOGA3Q5TF21 947 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 ZCCHC8Q6NZY4 707 aaKnown RBP4.27□□□□□ -1.73
SNX4-202ENST00000465505 ZNF627Q7L945 461 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 ANKRD35Q8N283 1001 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 ZNF483Q8TF39 744 aaPredicted RBP4.27□□□□□ -1.73
SNX4-202ENST00000465505 E2F7Q96AV8 911 aa4.27□□□□□ -1.73
SNX4-202ENST00000465505 SLC7A6OSQ96CW6 309 aaPredicted RBP4.27□□□□□ -1.73
SNX4-202ENST00000465505 RPL10LQ96L21 214 aaKnown RBP4.27□□□□□ -1.73
SNX4-202ENST00000465505 MYH16Q9H6N6 1097 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms