RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 KIAA0753Q2KHM9 967 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 ANO6Q4KMQ2 910 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 MARCH8Q5T0T0 291 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 CTU1Q7Z7A3 348 aaKnown RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 SFR1Q86XK3 245 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 TMEM143Q96AN5 459 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 RBSNQ9H1K0 784 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 IKZF4Q9H2S9 585 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 ZHX3Q9H4I2 956 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 DHX33Q9H6R0 707 aaKnown RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 NRBP2Q9NSY0 501 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 HOOK1Q9UJC3 728 aaKnown RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 SIP14410 1827 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 GRIN2DO15399 1336 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 PVALEFA0A1B0GWK0 134 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 MYL1P05976 194 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 ASGR1P07306 291 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 GJB1P08034 283 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 NMT1P30419 496 aaKnown RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 PRCPP42785 496 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 CTCFP49711 727 aaPredicted RBP12.18□□□□□ -0.46
SCN9A-205ENST00000454569 PSEN2P49810 448 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 CPT1AP50416 773 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 KCNB1Q14721 858 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 EMC2Q15006 297 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 SLC9C1Q4G0N8 1177 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 TMEM92Q6UXU6 159 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 KSR1Q8IVT5 923 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 LRRC71Q8N4P6 559 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 SETD4Q9NVD3 440 aa12.18□□□□□ -0.46
SCN9A-205ENST00000454569 MKI67P46013 3256 aaKnown RBP12.17□□□□□ -0.46
SCN9A-205ENST00000454569 HBP1O60381 514 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 MAFO75444 373 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-205ENST00000454569 C22orf31O95567 290 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 SMIM10L2AP0DMW4 78 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 SMIM10L2BP0DMW5 78 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 CCDC192P0DO97 292 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 CCL5P13501 91 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 SLC26A2P50443 739 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 ZNF131P52739 623 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 KCNA1Q09470 495 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 HERC4Q5GLZ8 1057 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-205ENST00000454569 FAM102BQ5T8I3 360 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 ZNF658Q5TYW1 1059 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-205ENST00000454569 LRRC27Q9C0I9 530 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 TSPY26PQ9H489 355 aa12.17□□□□□ -0.46
SCN9A-205ENST00000454569 PAK6Q9NQU5 681 aaPredicted RBP12.17□□□□□ -0.46
SCN9A-205ENST00000454569 ADGRA3Q8IWK6 1321 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 IGKV6-21A0A0C4DH24 114 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 DGAT1O75907 488 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 MYBP10242 640 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 KLRC1P26715 233 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 HOXD13P35453 343 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 POLGP54098 1239 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-205ENST00000454569 PMS1P54277 932 aaKnown RBP12.16□□□□□ -0.46
SCN9A-205ENST00000454569 GRIK4Q16099 956 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 STX1AQ16623 288 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 ZC2HC1CQ53FD0 456 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-205ENST00000454569 MYCT1Q8N699 235 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 RNF214Q8ND24 703 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 ASAP3Q8TDY4 903 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 ZNF668Q96K58 619 aaPredicted RBP12.16□□□□□ -0.46
SCN9A-205ENST00000454569 FAM167AQ96KS9 214 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 CCDC43Q96MW1 224 aaKnown RBP12.16□□□□□ -0.46
SCN9A-205ENST00000454569 DEFB118Q96PH6 123 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 KIFC3Q9BVG8 833 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 EXOC1Q9NV70 894 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 HDAC6Q9UBN7 1215 aa12.16□□□□□ -0.46
SCN9A-205ENST00000454569 GABBR2O75899 941 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 FAM13AO94988 1023 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 GLRA2P23416 452 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 CST5P28325 142 aaPredicted RBP12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ARL2P36404 184 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 CLCN3P51790 818 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 PEX3P56589 373 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 STX17P56962 302 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ADAM17P78536 824 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 PPFIA1Q13136 1202 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 IQCB1Q15051 598 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 NBPF20Q3BBV1 942 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ZNF484Q5JVG2 852 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 FAM26FQ5R3K3 315 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 FBXO46Q6PJ61 603 aaPredicted RBP12.15□□□□□ -0.46
SCN9A-205ENST00000454569 MTHFD1LQ6UB35 978 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 CCDC65Q8IXS2 484 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 LINC01465Q8N7H1 131 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 TRIML1Q8N9V2 468 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 LMBR1Q8WVP7 490 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 CCDC34Q96HJ3 373 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 RNF208Q9H0X6 261 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 POLR3FQ9H1D9 316 aaPredicted RBP12.15□□□□□ -0.46
SCN9A-205ENST00000454569 SUGCTQ9HAC7 445 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ATP6V0A4Q9HBG4 840 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 CBX8Q9HC52 389 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ANO10Q9NW15 660 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 KCND2Q9NZV8 630 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ZNF215Q9UL58 517 aaPredicted RBP12.15□□□□□ -0.46
SCN9A-205ENST00000454569 ODF2LQ9ULJ1 636 aa12.15□□□□□ -0.46
SCN9A-205ENST00000454569 TRIM49BA6NDI0 452 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms