RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 BTG4Q9NY30 223 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 VPS28Q9UK41 221 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CACNA1GO43497 2377 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ST20-MTHFSA0A0A6YYL1 179 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 A0A1W2PPH5 198 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LCHNA4D1U4 455 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC154A6NI56 674 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CAPN5O15484 640 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 IL18RAPO95256 599 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ARIH2O95376 493 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ALOX15P16050 662 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LIFRP42702 1097 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 NLRP12P59046 1061 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TMF1P82094 1093 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CDK17Q00537 523 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF543Q08ER8 600 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LRMPQ12912 555 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 PRPF4BQ13523 1007 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TRIM29Q14134 588 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 MBTPS1Q14703 1052 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TMEM132BQ14DG7 1078 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TTC31Q49AM3 519 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC30A6Q6NXT4 461 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CPLX2Q6PUV4 134 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC17A8Q8NDX2 589 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SNIP1Q8TAD8 396 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 IPCEF1Q8WWN9 437 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP2A3Q93084 1043 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF622Q969S3 477 aaKnown RBP eCLIP2.64□□□□□ -1.994e-8■■■□□ 16.1
CCDC88A-208ENST00000444458 APIPQ96GX9 242 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ELF4Q99607 663 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLF1Q9BQI6 1058 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 XPO4Q9C0E2 1151 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 BTBD1Q9H0C5 482 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 GGA3Q9NZ52 723 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ABCF2Q9UG63 623 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC39A10Q9ULF5 831 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 BACE2Q9Y5Z0 518 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 C2orf71A6NGG8 1288 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 HMX3A6NHT5 357 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 DAPK3O43293 454 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TGM5O43548 720 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CKMP06732 381 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 THP07101 528 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 GNAT1P11488 350 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 RPL17P18621 184 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ENPP1P22413 925 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC19A1P41440 591 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ID3Q02535 119 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TNP2Q05952 138 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC12A1Q13621 1099 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 PDCD1Q15116 288 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SMAD2Q15796 467 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CPEB4Q17RY0 729 aaKnown RBP eCLIP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ODF2Q5BJF6 829 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LIAT1Q6ZQX7 453 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 NBPF11Q86T75 865 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 GALNT13Q8IUC8 556 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SH2D3CQ8N5H7 860 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SYTL5Q8TDW5 730 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ASB12Q8WXK4 309 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 NANOS1Q8WY41 292 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 EAF2Q96CJ1 260 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 RSRC1Q96IZ7 334 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 MAELQ96JY0 434 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 KIF17Q9P2E2 1029 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ZBTB42B2RXF5 422 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 H7C1W4 665 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ACKR2O00590 384 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SCDO00767 359 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 EFSO43281 561 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RTN3O95197 1032 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MYF5P13349 255 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GYS1P13807 737 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ALOX12P18054 663 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RXRBP28702 533 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 IL12RB1P42701 662 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FXR1P51114 621 aaKnown RBP eCLIP2.63□□□□□ -1.993e-8■■■■□ 23.7
CCDC88A-208ENST00000444458 CREMQ03060 361 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC14A2Q15849 920 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 NBPF8Q3BBV2 869 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GJC2Q5T442 439 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 THEMIS2Q5TEJ8 643 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FAM205BPQ63HN1 556 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 TIGD7Q6NT04 549 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 C16orf59Q7L2K0 433 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 OVCH1Q7RTY7 1134 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CACNA2D3Q8IZS8 1091 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 IL22RA1Q8N6P7 574 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ANKRD52Q8NB46 1076 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 AFG1LQ8WV93 481 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RGMAQ96B86 450 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 WDR89Q96FK6 387 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ABHD17AQ96GS6 310 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 JAKMIP1Q96N16 626 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 NOL10Q9BSC4 688 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PDCL3Q9H2J4 239 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DEF6Q9H4E7 631 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ACSS2Q9NR19 701 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms