RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 ATP8A1Q9Y2Q0 1164 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 AK9Q5TCS8 1911 aa13.26□□□□□ -0.29
TCOF1-205ENST00000439160 CTNND1O60716 968 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 GGPS1O95749 300 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 FGGP02679 453 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 MYBP10242 640 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 FXR2P51116 673 aaKnown RBP eCLIP13.25□□□□□ -0.293e-7■■■■□ 22.9
TCOF1-205ENST00000439160 MYO1EQ12965 1108 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 NR1I3Q14994 352 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 CATSPER3Q86XQ3 398 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 MAP7D3Q8IWC1 876 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 DAGLBQ8NCG7 672 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 WDR24Q96S15 920 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 INTS2Q9H0H0 1204 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 KCNH7Q9NS40 1196 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 SALL1Q9NSC2 1324 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 BUB1BO60566 1050 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 TXNP10599 105 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 SURF1Q15526 300 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 CFAP157Q5JU67 520 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 KRT39Q6A163 491 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 ABI1Q8IZP0 508 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 TMEM143Q96AN5 459 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 PBKQ96KB5 322 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 KIAA1586Q9HCI6 787 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 ADAM22Q9P0K1 906 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 SEPT10Q9P0V9 454 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 HPSEQ9Y251 543 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 IQCA1LA6NCM1 817 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 SGK1O00141 431 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 ZSCAN20P17040 1043 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 GNGT1P63211 74 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 RFX6Q8HWS3 928 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 FBXL16Q8N461 479 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 SMC6Q96SB8 1091 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 EPC1Q9H2F5 836 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 PLCB1Q9NQ66 1216 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 CNOT8Q9UFF9 292 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 A6NJR5 290 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 NDC80O14777 642 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 NCK2O43639 380 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 KRT1P04264 644 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 MYL3P08590 195 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 RPS12P25398 132 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 ALDH3A1P30838 453 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 SHMT1P34896 483 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 NPEPPSP55786 919 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 TRIP13Q15645 432 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 FASTKD5Q7L8L6 764 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 RHOT2Q8IXI1 618 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 RPUSD2Q8IZ73 545 aaKnown RBP13.25□□□□□ -0.29
TCOF1-205ENST00000439160 MXRA8Q9BRK3 442 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 ANAPC7Q9UJX3 599 aa13.25□□□□□ -0.29
TCOF1-205ENST00000439160 PPP1R3GB7ZBB8 358 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 TAL1P17542 331 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 HOXA10P31260 410 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 INPP5BP32019 993 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 MRPS9P82933 396 aaKnown RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 RNF149Q8NC42 400 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 TAAR1Q96RJ0 339 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 MSH4O15457 936 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 EPHB4P54760 987 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 TTC31Q49AM3 519 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 TTC19Q6DKK2 380 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 B4GALNT4Q76KP1 1039 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 FRMD5Q7Z6J6 570 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 PACSIN2Q9UNF0 486 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 IFT172Q9UG01 1749 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 RIC1Q4ADV7 1423 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 A6NNZ2 444 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 MED7O43513 233 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 ACTN1P12814 892 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 PHKA2P46019 1235 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 TUBB8Q3ZCM7 444 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 LGSNQ5TDP6 509 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 RSRC2Q7L4I2 434 aaKnown RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 ERICH1Q86X53 443 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 OR6B3Q8NGW1 331 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 C11orf70Q9BRQ4 267 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 ABCB6Q9NP58 842 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 MED4Q9NPJ6 270 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 EIF3CLB5ME19 914 aaKnown RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 RGL2O15211 777 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 NFRKBQ6P4R8 1299 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 ZFPM1Q8IX07 1006 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 TC2NQ8N9U0 490 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 NSMCE1Q8WV22 266 aa13.24□□□□□ -0.29
TCOF1-205ENST00000439160 EIF3CQ99613 913 aaKnown RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 RBAKQ9NYW8 714 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 AGO2Q9UKV8 859 aaKnown RBP13.24□□□□□ -0.29
TCOF1-205ENST00000439160 KIF1AQ12756 1690 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 ZNF699Q32M78 642 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 CYP4F22Q6NT55 531 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 PDXDC1Q6P996 788 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 ECEL1O95672 775 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 CD44P16070 742 aaKnown RBP13.23□□□□□ -0.29
TCOF1-205ENST00000439160 STX2P32856 288 aa13.23□□□□□ -0.29
TCOF1-205ENST00000439160 RNASELQ05823 741 aaKnown RBP13.23□□□□□ -0.29
TCOF1-205ENST00000439160 DHX9Q08211 1270 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms