RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CBWD2Q8IUF1 395 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 PPM1KQ8N3J5 372 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 OR2W6PQ8NHA6 318 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 TMEM143Q96AN5 459 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 GMCL1Q96IK5 515 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 OSBPL9Q96SU4 736 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 CELF4Q9BZC1 486 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 FAM107BQ9H098 131 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 PARVGQ9HBI0 331 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 GGA3Q9NZ52 723 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 FAM153AQ9UHL3 310 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 NR2E1Q9Y466 385 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ZNF536O15090 1300 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ZNF541Q9H0D2 1346 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 A0A1W2PQJ5 194 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ATP8B1O43520 1251 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ENTPD3O75355 529 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 BAG6P46379 1132 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ATP1A2P50993 1020 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 GUCY2DQ02846 1103 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 MTM1Q13496 603 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 HLTFQ14527 1009 aaKnown RBP eCLIP9.13□□□□□ -0.95
CD44-208ENST00000428726 ZNF394Q53GI3 561 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 BEND6Q5SZJ8 279 aaPredicted RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 GJC2Q5T442 439 aaPredicted RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 MCTP2Q6DN12 878 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 TRAPPC11Q7Z392 1133 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 TRIM50Q86XT4 487 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 IFNLR1Q8IU57 520 aaPredicted RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 DAW1Q8N136 415 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 TAB3Q8N5C8 712 aaPredicted RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 GMLQ99445 158 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 HSD17B14Q9BPX1 270 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 TLR10Q9BXR5 811 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 DDX47Q9H0S4 455 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 DPH5Q9H2P9 285 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 SH2D4AQ9H788 454 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 UBE2TQ9NPD8 197 aaPredicted RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 NFU1Q9UMS0 254 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 EIF3CLB5ME19 914 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 ANKRD63C9JTQ0 380 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 PSMD10O75832 226 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 GJB6O95452 261 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 AFPP02771 609 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 PGK2P07205 417 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 EPB41P11171 864 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 CARSP49589 748 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 DRAP1Q14919 205 aaPredicted RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 HYIQ5T013 277 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 ALKBH5Q6P6C2 394 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 ZNF662Q6ZS27 426 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 CCDC170Q8IYT3 715 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 SLC35C1Q96A29 364 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 BICD1Q96G01 975 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 EIF3CQ99613 913 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 DNAJC17Q9NVM6 304 aaKnown RBP9.13□□□□□ -0.95
CD44-208ENST00000428726 BCCIPQ9P287 314 aaKnown RBP eCLIP9.13□□□□□ -0.95
CD44-208ENST00000428726 DNAJC12Q9UKB3 198 aa9.13□□□□□ -0.95
CD44-208ENST00000428726 IGSF9BQ9UPX0 1349 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 FOXN3O00409 490 aaPredicted RBP9.12□□□□□ -0.95
CD44-208ENST00000428726 CCNE2O96020 404 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 ASNSP08243 561 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 ACOT2P49753 483 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 KLHDC7AQ5VTJ3 777 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 SPOPLQ6IQ16 392 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 MOXD1Q6UVY6 613 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 RNF207Q6ZRF8 634 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 CREG2Q8IUH2 290 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 PASD1Q8IV76 773 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 SYTL5Q8TDW5 730 aaPredicted RBP9.12□□□□□ -0.95
CD44-208ENST00000428726 ZBTB45Q96K62 511 aaPredicted RBP9.12□□□□□ -0.95
CD44-208ENST00000428726 TEKT3Q9BXF9 490 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 EPB41L5Q9HCM4 733 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 RNF146Q9NTX7 359 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 GABBR1Q9UBS5 961 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 GINS2Q9Y248 185 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 EMSYQ7Z589 1322 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 ADM5C9JUS6 153 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 POTEB2H3BUK9 544 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 EVI5O60447 810 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 GLI1P08151 1106 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 CDK17Q00537 523 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 PPP3CAQ08209 521 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 DHX9Q08211 1270 aaKnown RBP9.12□□□□□ -0.95
CD44-208ENST00000428726 GPS2Q13227 327 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 AP3B2Q13367 1082 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 WHAMMP3Q1A5X7 153 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 HSP90B2PQ58FF3 399 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 C1orf186Q6ZWK4 172 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 DAAM2Q86T65 1068 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 ARHGEF19Q8IW93 802 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 EHBP1Q8NDI1 1231 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 GMCL1P1Q8NEA9 526 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 SPATA4Q8NEY3 305 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 FAM204AQ9H8W3 233 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 MRPL11Q9Y3B7 192 aaKnown RBP9.12□□□□□ -0.95
CD44-208ENST00000428726 SIPA1L1O43166 1804 aa9.12□□□□□ -0.95
CD44-208ENST00000428726 EYA4O95677 639 aa9.11□□□□□ -0.95
CD44-208ENST00000428726 KRT14P02533 472 aa9.11□□□□□ -0.95
CD44-208ENST00000428726 CYP3A7P24462 503 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms