RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 SIP14410 1827 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 IGF2BP3O00425 579 aaKnown RBP eCLIP5.57□□□□□ -1.52
RIF1-203ENST00000428287 MPHOSPH10O00566 681 aaKnown RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 MAP3K13O43283 966 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 SCG2P13521 617 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 LSAMPQ13449 338 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 GNPTABQ3T906 1256 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 RRAGAQ7L523 313 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 TBC1D1Q86TI0 1168 aaPredicted RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 OPTNQ96CV9 577 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 ZNF594Q96JF6 807 aaPredicted RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 MAML3Q96JK9 1138 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 ZNF510Q9Y2H8 683 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.57□□□□□ -1.52
RIF1-203ENST00000428287 AXIN2Q9Y2T1 843 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 ROBO3Q96MS0 1386 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 FRMD3A2A2Y4 597 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 ITGA4P13612 1032 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 SP100P23497 879 aaPredicted RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 DHX9Q08211 1270 aaKnown RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 CLUL1Q15846 466 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 SPICE1Q8N0Z3 855 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 CEP63Q96MT8 703 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 ASCC2Q9H1I8 757 aaPredicted RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 GANQ9H2C0 597 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 TMEM60Q9H2L4 133 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 CTTNBP2NLQ9P2B4 639 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 STOML1Q9UBI4 398 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 COL11A1P12107 1806 aaPredicted RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 DCCP43146 1447 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 ATP4AP20648 1035 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 CD151P48509 253 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 FAM69CQ0P6D2 419 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 SLC39A6Q13433 755 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 PDXDC1Q6P996 788 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 MAIP1Q8WWC4 291 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 SERPINB12Q96P63 405 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 FAM207AQ9NSI2 230 aaPredicted RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 BRCA2P51587 3418 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 AFPP02771 609 aaKnown RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 AUHQ13825 339 aaKnown RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 NELFCDQ8IXH7 590 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 LRRC34Q8IZ02 419 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 AGGF1Q8N302 714 aaeCLIP5.57□□□□□ -1.52
RIF1-203ENST00000428287 PTPRN2Q92932 1015 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 UBE2OQ9C0C9 1292 aaKnown RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 PHACTR1Q9C0D0 580 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 DDX47Q9H0S4 455 aaKnown RBP5.57□□□□□ -1.52
RIF1-203ENST00000428287 SAMD15Q9P1V8 674 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 PHF8Q9UPP1 1060 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 SLC4A7Q9Y6M7 1214 aa5.57□□□□□ -1.52
RIF1-203ENST00000428287 CDH16O75309 829 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 MTIF2P46199 727 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 RASSF2P50749 326 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 MTFR1Q15390 333 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 ODF2Q5BJF6 829 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 C1QTNF12Q5T7M4 302 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 FAM13CQ8NE31 585 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 ELAC2Q9BQ52 826 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 GORASP1Q9BQQ3 440 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 PIDD1Q9HB75 910 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 INCENPQ9NQS7 918 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 EMILIN3Q9NT22 766 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 CHKBQ9Y259 395 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 C2CD2Q9Y426 696 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 SCN2AQ99250 2005 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 MYOFQ9NZM1 2061 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 TSC2P49815 1807 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 XIRP2A4UGR9 3374 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 BACH1O14867 736 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 CHN1P15882 459 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 KIF5BP33176 963 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 LACTBP83111 547 aaPredicted RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 PIGOQ8TEQ8 1089 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 DNAJC19Q96DA6 116 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 NAP1L3Q99457 506 aaPredicted RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 PAIP2Q9BPZ3 127 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 MXD3Q9BW11 206 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 SEMA4AQ9H3S1 761 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 SAR1AQ9NR31 198 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 STX18Q9P2W9 335 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 STRCP1A6NGW2 1772 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 PLXNB2O15031 1838 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 TTI1O43156 1089 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 TBX10O75333 385 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 PYGLP06737 847 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 UQCRFS1P1P0C7P4 283 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 IFI35P80217 286 aaPredicted RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 IFIT5Q13325 482 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 ALKBH5Q6P6C2 394 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 OR2W6PQ8NHA6 318 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 LZICQ8WZA0 190 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 LRRC59Q96AG4 307 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 NR1H4Q96RI1 486 aaPredicted RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 LNPEPQ9UIQ6 1025 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 PLCG1P19174 1290 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 PTDSS1P48651 473 aaKnown RBP5.56□□□□□ -1.52
RIF1-203ENST00000428287 CREB5Q02930 508 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 PTK2Q05397 1052 aa5.56□□□□□ -1.52
RIF1-203ENST00000428287 WASHC2DQ5SRD0 308 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms