RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 E2F4Q16254 413 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ACBD5Q5T8D3 534 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 DUS1LQ6P1R4 473 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 GPR142Q7Z601 462 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FCHSD1Q86WN1 690 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CPA6Q8N4T0 437 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC4A11Q8NBS3 891 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 GSDMBQ8TAX9 411 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 BRI3BPQ8WY22 251 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CDCA7LQ96GN5 454 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 GUCD1Q96NT3 240 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 FTHL17Q9BXU8 183 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ZCCHC2Q9C0B9 1178 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 DHX36Q9H2U1 1008 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 PCMTD2Q9NV79 361 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 AGTPBP1Q9UPW5 1226 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 ATP7BP35670 1465 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 THOC2Q8NI27 1593 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 DCCP43146 1447 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 CHD1O14646 1710 aa3.06□□□□□ -1.92
CCDC88A-205ENST00000426576 POTEMA6NI47 508 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MASP2O00187 686 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 SMAD7O15105 426 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ACTN4O43707 911 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CHRNA1P02708 482 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 BMP4P12644 408 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TGM2P21980 687 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GLRBP48167 497 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ELAVL2Q12926 359 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 UBAP2LQ14157 1087 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TBC1D25Q3MII6 688 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 POTEGQ6S5H5 508 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 LAYNQ6UX15 382 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 DHX40Q8IX18 779 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM43AQ8N2R8 423 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PRPF38AQ8NAV1 312 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MCRS1Q96EZ8 462 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CCDC34Q96HJ3 373 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CDK5RAP3Q96JB5 506 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 KCNS3Q9BQ31 491 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CENPHQ9H3R5 247 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ALG2Q9H553 416 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GPAMQ9HCL2 828 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ALG13Q9NP73 1137 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF71Q9NQZ8 489 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM217BQ9NTX9 383 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MCM9Q9NXL9 1143 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MAGED2Q9UNF1 606 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 RAI2Q9Y5P3 530 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 EFCAB6Q5THR3 1501 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TRABD2BA6NFA1 517 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CLIC2O15247 247 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CTNND1O60716 968 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 APODP05090 189 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CCNYL3P0C7X3 344 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 BMP1P13497 986 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ABOP16442 354 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CCT4P50991 539 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ART1P52961 327 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 EPHB3P54753 998 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 HNRNPH2P55795 449 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 RRP1P56182 461 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 IRF5Q13568 498 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MVPQ14764 893 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ACCSLQ4AC99 568 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 DUSP28Q4G0W2 176 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CT47A1Q5JQC4 288 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 CC2D1BQ5T0F9 858 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ESRP1Q6NXG1 681 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 OOSP2Q86WS3 158 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 SPICE1Q8N0Z3 855 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 BEND7Q8N7W2 519 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TTC8Q8TAM2 541 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 SYTL5Q8TDW5 730 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 AFAP1L1Q8TED9 768 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 SSC4DQ8WTU2 575 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 L3MBTL2Q969R5 705 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MSANTD3Q96H12 275 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 EHD2Q9NZN4 543 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 KIF17Q9P2E2 1029 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PI4KBQ9UBF8 816 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PLA2G4CQ9UP65 541 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GPR182O15218 404 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 RANBP6O60518 1105 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 OATP04181 439 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 PRKAR1AP10644 381 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GHRP10912 638 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GUCY2CP25092 1073 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 KCNJ5P48544 419 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MAP3K10Q02779 954 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 RUNX1T1Q06455 604 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 MAP9Q49MG5 647 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 L1TD1Q5T7N2 865 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 JAKMIP3Q5VZ66 844 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 LYPD8Q6UX82 237 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 LBX2Q6XYB7 198 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 FSIP1Q8NA03 581 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 GCDHQ92947 438 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM176AQ96HP8 235 aa3.05□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF559Q9BR84 538 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms