RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C12orf60Q5U649 245 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 TAOK1Q7L7X3 1001 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 TEX9Q8N6V9 391 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 DYNLL2Q96FJ2 89 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 DBR1Q9UK59 544 aaKnown RBP11.58□□□□□ -0.56
USP54-204ENST00000422491 ARL2BPQ9Y2Y0 163 aa11.58□□□□□ -0.56
USP54-204ENST00000422491 RASGRF2O14827 1237 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 AP1G2O75843 785 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 GNAZP19086 355 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 FGFR4P22455 802 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 SKIV2L2P42285 1042 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 RPL21P46778 160 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 PRPF4BQ13523 1007 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 LRRC14Q15048 493 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 RBBP5Q15291 538 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 DIXDC1Q155Q3 683 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 EXOC3L4Q17RC7 722 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 CAVIN4Q5BKX8 364 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 BARGINQ6ZT62 677 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 ANKLE1Q8NAG6 615 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 UHMK1Q8TAS1 419 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 NAP1L3Q99457 506 aaPredicted RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 SIX2Q9NPC8 291 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP54-204ENST00000422491 LRRC42Q9Y546 428 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 PCDHA3Q9Y5H8 950 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 ESYT2A0FGR8 921 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 CETN3O15182 167 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 AFPP02771 609 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 PPP4R3CPQ6ZMV5 832 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 SPATA21Q7Z572 469 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 VPS36Q86VN1 386 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 SLC30A5Q8TAD4 765 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 LNX1Q8TBB1 728 aaPredicted RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 SLC35G2Q8TBE7 412 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 U2AF1L4Q8WU68 220 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 RFFLQ8WZ73 363 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 UTP4Q969X6 686 aaKnown RBP11.57□□□□□ -0.56
USP54-204ENST00000422491 RMDN2Q96LZ7 410 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 CCDC113Q9H0I3 377 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 PRDM11Q9NQV5 511 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 EMILIN3Q9NT22 766 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 ITGB4P16144 1822 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 BCL9O00512 1426 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 ROBO3Q96MS0 1386 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 PHLPP1O60346 1717 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 IGSF9BQ9UPX0 1349 aa11.57□□□□□ -0.56
USP54-204ENST00000422491 VCAM1P19320 739 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 NR2F2P24468 414 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 RAB27AP51159 221 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 MGAT5Q09328 741 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 EPHA7Q15375 998 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 SOGA3Q5TF21 947 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 NUGGCQ68CJ6 796 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 VSTM1Q6UX27 236 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 KCNV2Q8TDN2 545 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 C18orf8Q96DM3 657 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 PLCD4Q9BRC7 762 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 NKX1-2Q9UD57 310 aaPredicted RBP11.56□□□□□ -0.56
USP54-204ENST00000422491 RASAL2Q9UJF2 1139 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 STX8Q9UNK0 236 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 RTCBQ9Y3I0 505 aaKnown RBP11.56□□□□□ -0.56
USP54-204ENST00000422491 LAMB2P55268 1798 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 DPPA5A6NC42 116 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 TSPY3P0CV98 308 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 TSPY8P0CW00 308 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 PRDX5P30044 214 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 PDE6BP35913 854 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 CTCFP49711 727 aaPredicted RBP11.56□□□□□ -0.56
USP54-204ENST00000422491 ZNF211Q13398 564 aaPredicted RBP11.56□□□□□ -0.56
USP54-204ENST00000422491 ZNF568Q3ZCX4 644 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 ANO7Q6IWH7 933 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 FRMD5Q7Z6J6 570 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 CCDC65Q8IXS2 484 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 DYDC1Q8WWB3 177 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 ALG3Q92685 438 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 NLRP3Q96P20 1036 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 TMEM120BA0PK00 339 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 PHF2O75151 1096 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 UPP2O95045 317 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 UNC5CO95185 931 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 RARGP13631 454 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 CREB1P16220 341 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 GBP1P32455 592 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 HYIQ5T013 277 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 CGB2Q6NT52 195 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 SLC30A9Q6PML9 568 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 MAEAQ7L5Y9 396 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 MGARPQ8TDB4 240 aa11.56□□□□□ -0.56
USP54-204ENST00000422491 MTRF1LQ9UGC7 380 aaKnown RBP11.56□□□□□ -0.56
USP54-204ENST00000422491 ARMCX3Q9UH62 379 aaPredicted RBP11.56□□□□□ -0.56
USP54-204ENST00000422491 NPHP3-ACAD11A0A0J9YXS1 232 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 NTSR2O95665 410 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 TMEM253P0C7T8 217 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 NEFHP12036 1026 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 FERP16591 822 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 CACNB1Q02641 598 aaPredicted RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 CMPK2Q5EBM0 449 aa11.55□□□□□ -0.56
USP54-204ENST00000422491 HERC4Q5GLZ8 1057 aaPredicted RBP11.55□□□□□ -0.56
USP54-204ENST00000422491 PRELID2Q8N945 189 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms