RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 AUTS2Q8WXX7 1259 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 MRPS27Q92552 414 aaKnown RBP14.62□□□□□ -0.07
LINC00339-202ENST00000416769 LENG9Q96B70 501 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 ZNF577Q9BSK1 485 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 C22orf23Q9BZE7 217 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 ENTPD7Q9NQZ7 604 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 TSHZ2Q9NRE2 1034 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 RBM28Q9NW13 759 aaKnown RBP14.62□□□□□ -0.07
LINC00339-202ENST00000416769 GABBR1Q9UBS5 961 aa14.62□□□□□ -0.07
LINC00339-202ENST00000416769 NAP1L2Q9ULW6 460 aaPredicted RBP14.62□□□□□ -0.07
LINC00339-202ENST00000416769 MAFBQ9Y5Q3 323 aaPredicted RBP14.62□□□□□ -0.07
LINC00339-202ENST00000416769 GPR182O15218 404 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 LAG3P18627 525 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 RBM25P49756 843 aaKnown RBP14.61□□□□□ -0.07
LINC00339-202ENST00000416769 SLC26A2P50443 739 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 PTPN5P54829 565 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 ANAPC15P60006 121 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 KRT32Q14532 448 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 PKN1Q16512 942 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 LONRF3Q496Y0 759 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 C12orf76Q8N812 135 aaPredicted RBP14.61□□□□□ -0.07
LINC00339-202ENST00000416769 SH2D3AQ9BRG2 576 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 TMEM117Q9H0C3 514 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 POMKQ9H5K3 350 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 AAASQ9NRG9 546 aa14.61□□□□□ -0.07
LINC00339-202ENST00000416769 RIF1Q5UIP0 2472 aaKnown RBP14.61□□□□□ -0.07
LINC00339-202ENST00000416769 C2CD4DB7Z1M9 353 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 H0Y858 1186 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 ASGR2P07307 311 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 AVPR2P30518 371 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 PLCB3Q01970 1234 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 PFKFB3Q16875 520 aaPredicted RBP14.6□□□□□ -0.07
LINC00339-202ENST00000416769 PRR16Q569H4 304 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 EFCAB12Q6NXP0 572 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 TMEM184AQ6ZMB5 413 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 SYNE3Q6ZMZ3 975 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 NIPA1Q7RTP0 329 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 ECHDC2Q86YB7 292 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 HELQQ8TDG4 1101 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 BCL7CQ8WUZ0 217 aaPredicted RBP14.6□□□□□ -0.07
LINC00339-202ENST00000416769 BBXQ8WY36 941 aaPredicted RBP14.6□□□□□ -0.07
LINC00339-202ENST00000416769 AKT3Q9Y243 479 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 SNX14Q9Y5W7 946 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 HCFC2Q9Y5Z7 792 aa14.6□□□□□ -0.07
LINC00339-202ENST00000416769 MYO15AQ9UKN7 3530 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 MEIS3P2A8K0S8 358 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 CHMP2AO43633 222 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 B4GALT3O60512 393 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 BRD1O95696 1058 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 CYP3A4P08684 503 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 METAP2P50579 478 aaKnown RBP eCLIP14.59□□□□□ -0.07
LINC00339-202ENST00000416769 DHX32Q7L7V1 743 aaKnown RBP14.59□□□□□ -0.07
LINC00339-202ENST00000416769 ZNF598Q86UK7 904 aaKnown RBP14.59□□□□□ -0.07
LINC00339-202ENST00000416769 SLC39A11Q8N1S5 342 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 KREMEN2Q8NCW0 462 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 TNPO1Q92973 898 aaKnown RBP14.59□□□□□ -0.07
LINC00339-202ENST00000416769 LPPQ93052 612 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 PHKBQ93100 1093 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 ZNF558Q96NG5 402 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 CDCA3Q99618 268 aaPredicted RBP14.59□□□□□ -0.07
LINC00339-202ENST00000416769 ELAC1Q9H777 363 aaKnown RBP14.59□□□□□ -0.07
LINC00339-202ENST00000416769 SPTBN4Q9H254 2564 aa14.59□□□□□ -0.07
LINC00339-202ENST00000416769 FAM186AA6NE01 2351 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 C2orf71A6NGG8 1288 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 CLASP2O75122 1294 aaKnown RBP14.58□□□□□ -0.08
LINC00339-202ENST00000416769 PSMA5P28066 241 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 GPC3P51654 580 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 PRKCEQ02156 737 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 ZNF746Q6NUN9 644 aaPredicted RBP14.58□□□□□ -0.08
LINC00339-202ENST00000416769 TMC7Q7Z402 723 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 ZBTB33Q86T24 672 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 LRRC43Q8N309 656 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 TBC1D32Q96NH3 1257 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 TM6SF1Q9BZW5 370 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 LZTS1Q9Y250 596 aa14.58□□□□□ -0.08
LINC00339-202ENST00000416769 MSH4O15457 936 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 GFRA3O60609 400 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 OATP04181 439 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 PSAPP07602 524 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 HMGB1P09429 215 aaKnown RBP14.57□□□□□ -0.08
LINC00339-202ENST00000416769 DARSP14868 501 aaKnown RBP14.57□□□□□ -0.08
LINC00339-202ENST00000416769 EPCAMP16422 314 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 CA8P35219 290 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 RARS2Q5T160 578 aaKnown RBP14.57□□□□□ -0.08
LINC00339-202ENST00000416769 TMEM105Q8N8V8 129 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 VN1R3Q9BXE9 311 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 ZMYND12Q9H0C1 365 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 SPG21Q9NZD8 308 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 SAMM50Q9Y512 469 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 PCDHA10Q9Y5I2 948 aa14.57□□□□□ -0.08
LINC00339-202ENST00000416769 hCG_1984214I3L0E3 225 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 EIF4BP23588 611 aaKnown RBP14.56□□□□□ -0.08
LINC00339-202ENST00000416769 BCAR1P56945 870 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 ABI1Q8IZP0 508 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 REXO1Q8N1G1 1221 aaKnown RBP14.56□□□□□ -0.08
LINC00339-202ENST00000416769 ZNF713Q8N859 430 aaPredicted RBP14.56□□□□□ -0.08
LINC00339-202ENST00000416769 MRPL43Q8N983 215 aaKnown RBP14.56□□□□□ -0.08
LINC00339-202ENST00000416769 ATOH1Q92858 354 aaPredicted RBP14.56□□□□□ -0.08
LINC00339-202ENST00000416769 SNX27Q96L92 541 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 RIPOR3Q96MK2 946 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms